Gene detail

Detailed information of g640.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_022802080.1, transcription factor AP-2-alpha-like isoform X2 [Stylophora pistillata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RJ20	Transcription factor AP-2-delta OS=Danio rerio OX=7955 GN=tfap2d PE=2 SV=1
Q7Z6R9	Transcription factor AP-2-delta OS=Homo sapiens OX=9606 GN=TFAP2D PE=1 SV=1
Q91ZK0	Transcription factor AP-2-delta OS=Mus musculus OX=10090 GN=Tfap2d PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000012 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000260 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000460 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000521 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000634 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002746 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003399 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004024 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008598 (this species only) · gene tree & orthology
Transcription factor family	AP-2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00209 all species →	SNF	Sodium:neurotransmitter symporter family	Family	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF03299 all species →	TF_AP-2	Transcription factor AP-2	Family	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF01082 all species →	Cu2_monooxygen	Copper type II ascorbate-dependent monooxygenase, N-terminal domain	Domain	Interproscan
PF03712 all species →	Cu2_monoox_C	Copper type II ascorbate-dependent monooxygenase, C-terminal domain	Domain	Interproscan
PF03351 all species →	DOMON	DOMON domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000175 all species →	Family	Sodium:neurotransmitter symporter	Interproscan
IPR037272 all species →	Homologous_superfamily	Sodium:neurotransmitter symporter superfamily	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR013854 all species →	Domain	Transcription factor AP-2, C-terminal	Interproscan
IPR004979 all species →	Family	Transcription factor AP-2	Interproscan
IPR050839 all species →	Family	Rho-associated Serine/Threonine Kinase	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR050168 all species →	Family	AAA ATPase domain-containing protein	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR008977 all species →	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR005018 all species →	Domain	DOMON domain	Interproscan
IPR000323 all species →	Domain	Copper type II, ascorbate-dependent monooxygenase, N-terminal	Interproscan
IPR036939 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily	Interproscan
IPR024548 all species →	Domain	Copper type II ascorbate-dependent monooxygenase, C-terminal	Interproscan
IPR028460 all species →	Family	Tyramine beta-hydroxylase/Dopamine beta-hydroxylase	Interproscan
IPR045266 all species →	Domain	Copper-dependent monooxygenases, DOMON domain	Interproscan
IPR014784 all species →	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Interproscan
IPR000945 all species →	Family	Dopamine beta-hydroxylase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11616 all species →	SODIUM/CHLORIDE DEPENDENT TRANSPORTER	Interproscan
PTHR47969 all species →	CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED	Interproscan
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan
PTHR10812 all species →	TRANSCRIPTION FACTOR AP-2	Interproscan
PTHR22988 all species →	MYOTONIC DYSTROPHY S/T KINASE-RELATED	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan
PTHR23077 all species →	AAA-FAMILY ATPASE	Interproscan
PTHR10157 all species →	DOPAMINE BETA HYDROXYLASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005875 all species →	Cellular Component	microtubule associated complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0051231 all species →	Biological Process	spindle elongation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000083 all species →	Biological Process	obsolete regulation of transcription involved in G1/S transition of mitotic cell cycle	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004693 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0031032 all species →	Biological Process	actomyosin structure organization	Interproscan
GO:0048598 all species →	Biological Process	embryonic morphogenesis	Interproscan
GO:0072518 all species →	Molecular Function	Rho-dependent protein serine/threonine kinase activity	Interproscan
GO:1901888 all species →	Biological Process	regulation of cell junction assembly	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016715 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0004500 all species →	Molecular Function	dopamine beta-monooxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04345	PKA; protein kinase A	EC:2.7.11.11	Chromosome and associated proteins	ko03036	deepkoala
K13056	C3H-4; CCCH zinc finger protein C3H-4	-	Oocyte meiosis	ko04114	deepkoala
K15595	CDK17, PCTK2; cyclin-dependent kinase 17	EC:2.7.11.22	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →