Gene detail

Detailed information of g641.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_040128613.1, nucleolar complex protein 3 homolog isoform X2 [Ictidomys tridecemlineatus]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R952	Nucleolar complex protein 3 homolog OS=Pongo abelii OX=9601 GN=NOC3L PE=2 SV=1
Q8VI84	Nucleolar complex protein 3 homolog OS=Mus musculus OX=10090 GN=Noc3l PE=2 SV=2
Q91Y26	Nucleolar complex protein 3 homolog OS=Cricetulus griseus OX=10029 GN=NOC3L PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only)
Orthogroup (gene family)	OG0000018 (this species only)
Orthogroup (gene family)	OG0000043 (this species only)
Orthogroup (gene family)	OG0003711 (this species only)
Orthogroup (gene family)	OG0004044 (this species only)
Orthogroup (gene family)	OG0004084 (this species only)
Orthogroup (gene family)	OG0006022 (this species only)
Orthogroup (gene family)	OG0006492 (this species only)
Orthogroup (gene family)	OG0006870 (this species only)
Orthogroup (gene family)	OG0013095 (this species only)
Orthogroup (gene family)	OG0017614 (this species only)
Orthogroup (gene family)	OG0019633 (this species only)
Orthogroup (gene family)	OG0021362 (this species only)
Orthogroup (gene family)	OG0080617 (this species only)
Orthogroup (gene family)	OG0172568 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF05019 all species →	Coq4	Coenzyme Q (ubiquinone) biosynthesis protein Coq4	Family	Interproscan
PF03914 all species →	CBF	CBF/Mak21 family	Repeat	Interproscan
PF10152 all species →	CCDC53	Subunit CCDC53 of WASH complex	Coiled-coil	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF09637 all species →	Med18	Med18 protein	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF03061 all species →	4HBT	Thioesterase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR027540 all species →	Family	Ubiquinone biosynthesis protein Coq4, eukaryotic	Interproscan
IPR007715 all species →	Family	Ubiquinone biosynthesis protein Coq4	Interproscan
IPR016903 all species →	Family	Nucleolar complex-associated protein 3	Interproscan
IPR005612 all species →	Domain	CCAAT-binding factor	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR019309 all species →	Family	WASH complex subunit 3	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051982 all species →	Family	Ciliary Assembly and Mitochondrial Import	Interproscan
IPR019095 all species →	Family	Mediator complex, subunit Med18	Interproscan
IPR033270 all species →	Family	VPRBP/DCAF1 family	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR006683 all species →	Domain	Thioesterase domain	Interproscan
IPR039298 all species →	Family	Acyl-coenzyme A thioesterase 13	Interproscan
IPR029069 all species →	Homologous_superfamily	HotDog domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12922 all species →	UBIQUINONE BIOSYNTHESIS PROTEIN	Interproscan
PTHR14428 all species →	NUCLEOLAR COMPLEX PROTEIN 3	Interproscan
PTHR13015 all species →	PROTEIN AD-016-RELATED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR45984 all species →	RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG	Interproscan
PTHR13129 all species →	VPRBP PROTEIN-RELATED	Interproscan
PTHR21660 all species →	THIOESTERASE SUPERFAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006744 all species →	Biological Process	ubiquinone biosynthetic process	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0071203 all species →	Cellular Component	WASH complex	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006626 all species →	Biological Process	protein targeting to mitochondrion	Interproscan
GO:0031072 all species →	Molecular Function	heat shock protein binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0047617 all species →	Molecular Function	fatty acyl-CoA hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03005	RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49	-	Transcription machinery	ko03021	deepkoala
K14834	NOC3; nucleolar complex protein 3	-	Ribosome biogenesis	ko03009	deepkoala
K18586	COQ4; ubiquinone biosynthesis protein COQ4	-	Cofactor metabolism	-	deepkoala
K19870	SPAG1; sperm-associated antigen 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.