Detailed information of g641.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_040128613.1, nucleolar complex protein 3 homolog isoform X2 [Ictidomys tridecemlineatus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5R952Nucleolar complex protein 3 homolog OS=Pongo abelii OX=9601 GN=NOC3L PE=2 SV=1
Q8VI84Nucleolar complex protein 3 homolog OS=Mus musculus OX=10090 GN=Noc3l PE=2 SV=2
Q91Y26Nucleolar complex protein 3 homolog OS=Cricetulus griseus OX=10029 GN=NOC3L PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF20700MutatorMutator-like transposaseDomainInterproscan
PF05019Coq4Coenzyme Q (ubiquinone) biosynthesis protein Coq4FamilyInterproscan
PF03914CBFCBF/Mak21 familyRepeatInterproscan
PF10152CCDC53Subunit CCDC53 of WASH complexCoiled-coilInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00515TPR_1Tetratricopeptide repeatRepeatInterproscan
PF13432TPR_16Tetratricopeptide repeatRepeatInterproscan
PF09637Med18Med18 proteinDomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF030614HBTThioesterase superfamilyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR049012DomainMutator-like transposase domainInterproscan
IPR027540FamilyUbiquinone biosynthesis protein Coq4, eukaryoticInterproscan
IPR007715FamilyUbiquinone biosynthesis protein Coq4Interproscan
IPR016903FamilyNucleolar complex-associated protein 3Interproscan
IPR005612DomainCCAAT-binding factorInterproscan
IPR003609DomainPAN/Apple domainInterproscan
IPR019309FamilyWASH complex subunit 3Interproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR051982FamilyCiliary Assembly and Mitochondrial ImportInterproscan
IPR019095FamilyMediator complex, subunit Med18Interproscan
IPR033270FamilyVPRBP/DCAF1 familyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR006683DomainThioesterase domainInterproscan
IPR039298FamilyAcyl-coenzyme A thioesterase 13Interproscan
IPR029069Homologous_superfamilyHotDog domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12922UBIQUINONE BIOSYNTHESIS PROTEINInterproscan
PTHR14428NUCLEOLAR COMPLEX PROTEIN 3Interproscan
PTHR13015PROTEIN AD-016-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR45984RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOGInterproscan
PTHR13129VPRBP PROTEIN-RELATEDInterproscan
PTHR21660THIOESTERASE SUPERFAMILY MEMBER-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0005743Cellular Componentmitochondrial inner membraneInterproscan
GO:0006744Biological Processubiquinone biosynthetic processInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006270Biological ProcessDNA replication initiationInterproscan
GO:0071203Cellular ComponentWASH complexInterproscan
GO:0006887Biological ProcessexocytosisInterproscan
GO:0030041Biological Processactin filament polymerizationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006626Biological Processprotein targeting to mitochondrionInterproscan
GO:0031072Molecular Functionheat shock protein bindingInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0080008Cellular ComponentCul4-RING E3 ubiquitin ligase complexInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0047617Molecular Functionfatty acyl-CoA hydrolase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03005RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49-Ribosome biogenesisko03009deepkoala
Cytoskeleton proteinsko04812deepkoala
Cofactor metabolism-deepkoala
Transcription machineryko03021deepkoala

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