Detailed information of g642.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAB3984295.1, transposase [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q2KID0Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1
Q8VBV3Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1
Q13868Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14702hGDE_centralCentral domain of human glycogen debranching enzymeDomainInterproscan
PF21266RRP4_S1RRP4, S1 domainDomainInterproscan
PF15985KH_6KH domainDomainInterproscan
PF07722Peptidase_C26Peptidase C26DomainInterproscan
PF21639ORC5_lidORC5, lid domainDomainInterproscan
PF13191AAA_16AAA ATPase domainDomainInterproscan
PF00194Carb_anhydraseEukaryotic-type carbonic anhydraseDomainInterproscan
PF01557FAA_hydrolaseFumarylacetoacetate (FAA) hydrolase familyFamilyInterproscan
PF09298FAA_hydrolase_NFumarylacetoacetase N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010401FamilyGlycogen debranching enzymeInterproscan
IPR032788DomainGlycogen debranching enzyme, central domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR026699FamilyExosome complex RNA-binding protein 1/RRP40/RRP4Interproscan
IPR048565DomainRRP4, S1 domainInterproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR015527FamilyPeptidase C26, gamma-glutamyl hydrolaseInterproscan
IPR029062Homologous_superfamilyClass I glutamine amidotransferase-likeInterproscan
IPR011697FamilyPeptidase C26Interproscan
IPR048866DomainORC5, lid domainInterproscan
IPR020796FamilyOrigin recognition complex, subunit 5Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR041664DomainOrc1-like, AAA ATPase domainInterproscan
IPR023561FamilyCarbonic anhydrase, alpha-classInterproscan
IPR001148DomainAlpha carbonic anhydrase domainInterproscan
IPR036398Homologous_superfamilyAlpha carbonic anhydrase domain superfamilyInterproscan
IPR018338Conserved_siteCarbonic anhydrase, alpha-class, conserved siteInterproscan
IPR011234DomainFumarylacetoacetase-like, C-terminalInterproscan
IPR036663Homologous_superfamilyFumarylacetoacetase-like, C-terminal domain superfamilyInterproscan
IPR036462Homologous_superfamilyFumarylacetoacetase, N-terminal domain superfamilyInterproscan
IPR005959FamilyFumarylacetoacetaseInterproscan
IPR015377DomainFumarylacetoacetase, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR34490PROTEIN CBG12054-RELATEDInterproscan
PTHR10569GLYCOGEN DEBRANCHING ENZYMEInterproscan
PTHR47501TRANSPOSASE-RELATEDInterproscan
PTHR21321PNAS-3 RELATEDInterproscan
PTHR11315PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASEInterproscan
PTHR12705ORIGIN RECOGNITION COMPLEX SUBUNIT 5Interproscan
PTHR18952CARBONIC ANHYDRASEInterproscan
PTHR43069FUMARYLACETOACETASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004134Molecular Function4-alpha-glucanotransferase activityInterproscan
GO:0004135Molecular Functionamylo-alpha-1,6-glucosidase activityInterproscan
GO:0005980Biological Processglycogen catabolic processInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000178Cellular Componentexosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034475Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0043928Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071034Biological ProcessCUT catabolic processInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071051Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan
GO:0008242Molecular Functionomega peptidase activityInterproscan
GO:0005773Cellular ComponentvacuoleInterproscan
GO:0034722Molecular Functiongamma-glutamyl-peptidase activityInterproscan
GO:0046900Biological Processtetrahydrofolylpolyglutamate metabolic processInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0000808Cellular Componentorigin recognition complexInterproscan
GO:0003688Molecular FunctionDNA replication origin bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005664Cellular Componentnuclear origin of replication recognition complexInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006270Biological ProcessDNA replication initiationInterproscan
GO:0004089Molecular Functioncarbonate dehydratase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004334Molecular Functionfumarylacetoacetase activityInterproscan
GO:0009072Biological Processaromatic amino acid metabolic processInterproscan
GO:0006559Biological ProcessL-phenylalanine catabolic processInterproscan
GO:0006572Biological Processtyrosine catabolic processInterproscan
GO:1902000Biological Processhomogentisate catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01307GGH; gamma-glutamyl hydrolaseEC:3.4.19.9
Messenger RNA biogenesisko03019deepkoala
Peptidases and inhibitorsko01002deepkoala

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