Gene detail

Detailed information of g643.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_052704377.1, cGMP-specific 3',5'-cyclic phosphodiesterase-like isoform X6 [Crassostrea angulata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91ZQ1	Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' OS=Mus musculus OX=10090 GN=Pde6c PE=2 SV=1
P11541	Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha OS=Bos taurus OX=9913 GN=PDE6A PE=1 SV=3
P27664	Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha OS=Mus musculus OX=10090 GN=Pde6a PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000028 (this species only)
Orthogroup (gene family)	OG0000071 (this species only)
Orthogroup (gene family)	OG0000097 (this species only)
Orthogroup (gene family)	OG0000343 (this species only)
Orthogroup (gene family)	OG0000883 (this species only)
Orthogroup (gene family)	OG0001273 (this species only)
Orthogroup (gene family)	OG0001672 (this species only)
Orthogroup (gene family)	OG0002419 (this species only)
Orthogroup (gene family)	OG0004062 (this species only)
Orthogroup (gene family)	OG0004396 (this species only)
Orthogroup (gene family)	OG0007777 (this species only)
Orthogroup (gene family)	OG0008942 (this species only)
Orthogroup (gene family)	OG0009644 (this species only)
Orthogroup (gene family)	OG0014201 (this species only)
Orthogroup (gene family)	OG0174494 (this species only)
Transcription factor family	bHLH · all TF in this species
Transcription factor family	zf-GATA · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF12662 all species →	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF07474 all species →	G2F	G2F domain	Domain	Interproscan
PF00320 all species →	GATA	GATA zinc finger	Domain	Interproscan
PF00233 all species →	PDEase_I	3'5'-cyclic nucleotide phosphodiesterase	Domain	Interproscan
PF02889 all species →	Sec63	Sec63 Brl domain	Family	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF05221 all species →	AdoHcyase	S-adenosyl-L-homocysteine hydrolase	Domain	Interproscan
PF00836 all species →	Stathmin	Stathmin family	Family	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF00003 all species →	7tm_3	7 transmembrane sweet-taste receptor of 3 GCPR	Domain	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF00380 all species →	Ribosomal_S9	Ribosomal protein S9/S16	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026183 all species →	Family	Taxilin family	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR009017 all species →	Homologous_superfamily	Green fluorescent protein	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR006605 all species →	Domain	G2 nidogen/fibulin G2F	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR026823 all species →	Domain	Complement Clr-like EGF domain	Interproscan
IPR050751 all species →	Family	Extracellular matrix structural protein	Interproscan
IPR000679 all species →	Domain	Zinc finger, GATA-type	Interproscan
IPR039355 all species →	Family	Transcription factor GATA	Interproscan
IPR013088 all species →	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR002073 all species →	Domain	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	Interproscan
IPR036971 all species →	Homologous_superfamily	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR052247 all species →	Family	Meiotic Crossover Helicase	Interproscan
IPR004179 all species →	Domain	Sec63 domain	Interproscan
IPR052207 all species →	Family	Max-like/E-box-binding transcription factors	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR000043 all species →	Family	Adenosylhomocysteinase-like	Interproscan
IPR042172 all species →	Homologous_superfamily	Adenosylhomocysteinase-like superfamily	Interproscan
IPR036002 all species →	Homologous_superfamily	Stathmin superfamily	Interproscan
IPR000956 all species →	Family	Stathmin family	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR017979 all species →	Conserved_site	GPCR, family 3, conserved site	Interproscan
IPR038550 all species →	Homologous_superfamily	GPCR, family 3, nine cysteines domain superfamily	Interproscan
IPR017978 all species →	Domain	GPCR family 3, C-terminal	Interproscan
IPR050726 all species →	Family	Metabotropic Glutamate Receptor	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR000337 all species →	Family	GPCR, family 3	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR020574 all species →	Conserved_site	Small ribosomal subunit protein uS9, conserved site	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR000754 all species →	Family	Small ribosomal subunit protein uS9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16127 all species →	TAXILIN	Interproscan
PTHR24034 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR34615 all species →	PX DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10071 all species →	TRANSCRIPTION FACTOR GATA FAMILY MEMBER	Interproscan
PTHR11347 all species →	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	Interproscan
PTHR47835 all species →	HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG	Interproscan
PTHR15741 all species →	BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR	Interproscan
PTHR23420 all species →	ADENOSYLHOMOCYSTEINASE	Interproscan
PTHR10104 all species →	STATHMIN	Interproscan
PTHR24252 all species →	ACROSIN-RELATED	Interproscan
PTHR24060 all species →	METABOTROPIC GLUTAMATE RECEPTOR	Interproscan
PTHR21569 all species →	RIBOSOMAL PROTEIN S9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004114 all species →	Molecular Function	3',5'-cyclic-nucleotide phosphodiesterase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0033353 all species →	Biological Process	S-adenosylmethionine cycle	Interproscan
GO:0031110 all species →	Biological Process	regulation of microtubule polymerization or depolymerization	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007019 all species →	Biological Process	microtubule depolymerization	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0031175 all species →	Biological Process	neuron projection development	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0001640 all species →	Molecular Function	adenylate cyclase inhibiting G protein-coupled glutamate receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007216 all species →	Biological Process	G protein-coupled glutamate receptor signaling pathway	Interproscan
GO:0051966 all species →	Biological Process	regulation of synaptic transmission, glutamatergic	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00232	E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase	EC:1.3.3.6	Alcoholic liver disease	ko04936	deepkoala
K17894	GATA2; GATA-binding protein 2	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.