Detailed information of g643.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_052704377.1, cGMP-specific 3',5'-cyclic phosphodiesterase-like isoform X6 [Crassostrea angulata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q91ZQ1Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' OS=Mus musculus OX=10090 GN=Pde6c PE=2 SV=1
P11541Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha OS=Bos taurus OX=9913 GN=PDE6A PE=1 SV=3
P27664Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha OS=Mus musculus OX=10090 GN=Pde6a PE=2 SV=3
Gene familySubfamily
Transcription Factors FamilybHLH
Transcription Factors Familyzf-GATA

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF07474G2FG2F domainDomainInterproscan
PF00320GATAGATA zinc fingerDomainInterproscan
PF00233PDEase_I3'5'-cyclic nucleotide phosphodiesteraseDomainInterproscan
PF02889Sec63Sec63 Brl domainFamilyInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF05221AdoHcyaseS-adenosyl-L-homocysteine hydrolaseDomainInterproscan
PF00836StathminStathmin familyFamilyInterproscan
PF00089TrypsinTrypsinDomainInterproscan
PF000037tm_37 transmembrane sweet-taste receptor of 3 GCPRDomainInterproscan
PF01094ANF_receptorReceptor family ligand binding regionFamilyInterproscan
PF00380Ribosomal_S9Ribosomal protein S9/S16FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026183FamilyTaxilin familyInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR000742DomainEGF-like domainInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR009017Homologous_superfamilyGreen fluorescent proteinInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR006605DomainG2 nidogen/fibulin G2FInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR013106DomainImmunoglobulin V-set domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR050751FamilyExtracellular matrix structural proteinInterproscan
IPR000679DomainZinc finger, GATA-typeInterproscan
IPR039355FamilyTranscription factor GATAInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR002073Domain3'5'-cyclic nucleotide phosphodiesterase, catalytic domainInterproscan
IPR036971Homologous_superfamily3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR052247FamilyMeiotic Crossover HelicaseInterproscan
IPR004179DomainSec63 domainInterproscan
IPR052207FamilyMax-like/E-box-binding transcription factorsInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR000043FamilyAdenosylhomocysteinase-likeInterproscan
IPR042172Homologous_superfamilyAdenosylhomocysteinase-like superfamilyInterproscan
IPR036002Homologous_superfamilyStathmin superfamilyInterproscan
IPR000956FamilyStathmin familyInterproscan
IPR001254DomainSerine proteases, trypsin domainInterproscan
IPR009003Homologous_superfamilyPeptidase S1, PA clanInterproscan
IPR018114Active_siteSerine proteases, trypsin family, histidine active siteInterproscan
IPR043504Homologous_superfamilyPeptidase S1, PA clan, chymotrypsin-like foldInterproscan
IPR001314FamilyPeptidase S1A, chymotrypsin familyInterproscan
IPR017979Conserved_siteGPCR, family 3, conserved siteInterproscan
IPR038550Homologous_superfamilyGPCR, family 3, nine cysteines domain superfamilyInterproscan
IPR017978DomainGPCR family 3, C-terminalInterproscan
IPR050726FamilyMetabotropic Glutamate ReceptorInterproscan
IPR001828DomainReceptor, ligand binding regionInterproscan
IPR000337FamilyGPCR, family 3Interproscan
IPR028082Homologous_superfamilyPeriplasmic binding protein-like IInterproscan
IPR020574Conserved_siteSmall ribosomal subunit protein uS9, conserved siteInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR000754FamilySmall ribosomal subunit protein uS9Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16127TAXILINInterproscan
PTHR24034EGF-LIKE DOMAIN-CONTAINING PROTEINInterproscan
PTHR34615PX DOMAIN-CONTAINING PROTEINInterproscan
PTHR10071TRANSCRIPTION FACTOR GATA FAMILY MEMBERInterproscan
PTHR11347CYCLIC NUCLEOTIDE PHOSPHODIESTERASEInterproscan
PTHR47835HFM1, ATP DEPENDENT DNA HELICASE HOMOLOGInterproscan
PTHR15741BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTORInterproscan
PTHR23420ADENOSYLHOMOCYSTEINASEInterproscan
PTHR10104STATHMINInterproscan
PTHR24252ACROSIN-RELATEDInterproscan
PTHR24060METABOTROPIC GLUTAMATE RECEPTORInterproscan
PTHR21569RIBOSOMAL PROTEIN S9Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0019905Molecular Functionsyntaxin bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0045165Biological Processcell fate commitmentInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004114Molecular Function3',5'-cyclic-nucleotide phosphodiesterase activityInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0033353Biological ProcessS-adenosylmethionine cycleInterproscan
GO:0031110Biological Processregulation of microtubule polymerization or depolymerizationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0007019Biological Processmicrotubule depolymerizationInterproscan
GO:0015631Molecular Functiontubulin bindingInterproscan
GO:0031175Biological Processneuron projection developmentInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0001640Molecular Functionadenylate cyclase inhibiting G protein-coupled glutamate receptor activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007216Biological ProcessG protein-coupled glutamate receptor signaling pathwayInterproscan
GO:0051966Biological Processregulation of synaptic transmission, glutamatergicInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005763Cellular Componentmitochondrial small ribosomal subunitInterproscan
GO:0015935Cellular Componentsmall ribosomal subunitInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00232E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidaseEC:1.3.3.6
Transcription factorsko03000deepkoala
Alcoholic liver diseaseko04936deepkoala

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