Gene detail

Detailed information of g6461.t1 in Montipora capitata

Genomic Location: Sc0000138:166932...177370
NR annotation: XP_029205157.2, cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6461.t1

atggaagaagatagaacgaccaaccaggatgaatttaatgtttctttgcaacccgaagctacatgcactgtagacgcaaaggcactcgaagaaaatggcggggatcttgactttccattttcggcggaaactcaagtatcttctctttccgagctagctggagtcaaaagaaaacatgatgaaaaaacagatgatcaagttagcaagcatattcacctggatccagagtcatcagatggctttgctgaccttgcaacattggtaaacatgtcctctgcagtgtctcttgctgtttcccaggatgtgaattcccaaacattcagtaatagcagtcaaatcactgcactctctcaagagactacaactgcaacattaagtttatcagccgctgtagctgcccttgcggcaggacagctgactcaagaatcgccaatcattcccgcatctcaacctgcagtgcccagcgacaataataactctgtcaatcaagcttggtttactactaaagaggataaagatagtcttcacggcaaaggggtcaagtggagacaaggcatgtggtctaaagaagaaaatgacagactgagggagaatatacttgaatactgcaaggtcaacaacatcccagatcctaatatcataatatttgaaatgaccaaggatgatcgaaaagacttttacagaacaatcgccaaagggattaggcgtccattatttgccatctaccgacgtgtgctcagaatgtatgacagaagaaattatgtgggaaaatattctttggaagaagtacagcagttgaaatctttgaaagaaaaacacggcaatgactgggccacaattggtgctgctatgggacgcagtgcctcatctgtgaaggacagattcagactaatgagggaccactgtcattcagggaagtggacagctgaagaggaacagagactttcaagtgcagtccatgagctcagcagcgcaaattcaagtgattatattacagcaggaatatcatgggcatctgtggcggagagggttggcacaagatcagagaaacaatgccggtcaaaatggctaaattacttaaactggaaagagaagggaggacaagaatggacaaagcaagatgaaattcaacttattacaagaatccaggaaatgaatctccaagatgaaaacgatattgattggcaagttatggcaaataattgggccagtgttcgctcaccccagtggcttagaagcaagtggtgggcattgaaaaaacatgttcctgaaagtgaagcaacaacatttgaaggtatgtcttcatatttatacaacacatacattggaacactccggaataaaattgagaggcaagaagctcggtttaaagggagtcaccttccaaggctgcatattgtacccggaggaagaggagctcgggttaatccaactgaaaccataacaaattctggaatctctcataccattacagtgactagtgatggtagagtaacaagagatgatcatacatatcctctcagtagcagtcacaacagatttgaaatggtgcaagtcagtgccctaactgcacaagatatttttaacagtcagtcatctgtgcaaggggcaccatcatatatcattcaagcacctgcaggacagacgtacataatacaacaaccaacagggaacctggtaagacaggcacacactgaggagttaacaggagcatctgaggatctcaacacaagtcaacatgaccaggaggttgtcatgactacagctgttcttcaagcacatcatgcagttcaaaccctcccagcagtttcacctgagtttacacaggcaatagtgcagactgatatctctgggcccatcactgcatctgaattagcaaatgcagagctcacccactcagacattagcaaatctgtacctgaggatgaattacaggacagtgaagttgtgcaggatgatctgcctaatactctaggtgatactgttgtgaacagtgacacattgggtagccatgcagatctcacagctgatattcagatggaaggatctagtgaaaagggtgtgccagttataacacaatcaggtcctgcagcaattgctcaaaccttagatggtgaccagctcccacactctcctgttgtacatatgcatcaaattagctcacaaaacagggatgttgacccccttgttcacgtgactgtgatctcaagcatggaaacgagtctatcatcaactctgtcacctccctctggactgacaatttcccagcatgctttgtcaggaaacaataattcaaatgacttgtctgttaatgccgtggtacctcaagttactttgccagaccagatattacagtcacaatcagatgaacctacggtactgtctcccacggaaacaacaagtgttattatggtaactgaaaattcaatgtctgtttcgtccacattggagcacacggacacctggttatcaagttaa

Transcript

g6461.t1

ATGGAAGAAGATAGAACGACCAACCAGGATGAATTTAATGTTTCTTTGCAACCCGAAGCTACATGCACTGTAGACGCAAAGGCACTCGAAGAAAATGGCGGGGATCTTGACTTTCCATTTTCGGCGGAAACTCAAGTATCTTCTCTTTCCGAGCTAGCTGGAGtcaaaagaaaacatgatgaaaaAACAGATGATCAAGTTAGCAAGCATATTCACCTGGATCCAGAGTCATCAGATGGCTTTGCTGACCTTGCAACATTGGTAAACATGTCCTCTGCAGTGTCTCTTGCTGTTTCCCAGGATGTGAATTCCCAAACATTCAGTAATAGCAGTCAAATCACTGCACTCTCTCAAGAGACTACAACTGCAACATTAAGTTTATCAGCCGCTGTAGCTGCCCTTGCGGCAGGACAGCTGACTCAAGAATCGCCAATCATTCCCGCATCTCAACCTGCAGTGCCCAGCGACAATAATAACTCTGTCAATCAAGCTTGGTTTACTACTAAAGAGGATAAAGATAGTCTTCACGGCAAAGGGGTCAAGTGGAGACAAGGCATGTGGTCTAAAGAAGAAAATGACAGACTGAGGGAGAATATACTTGAATACTGCAAGGTCAACAACATCCCAGATCCTAATATCATAATatttgaaatgaccaaggatGATCGAAAAGACTTTTACAGAACAATCGCCAAAGGGATTAGGCGTCCATTATTTGCCATCTACCGACGTGTGCTCAGAATGTATGACAGAAGAAATTATGTGGGAAAATATTCTTTGGAAGAAGTACAGCAGTTGAAatctttgaaagaaaaacacGGCAATGACTGGGCCACAATTGGTGCTGCTATGGGACGCAGTGCCTCATCTGTGAAGGACAGATTCAGACTAATGAGGGACCACTGTCATTCAGGGAAGTGGACAGCTGAAGAGGAACAGAGACTTTCAAGTGCAGTCCATGAGCTCAGCAGCGCAAATTCAAGTGATTATATTACAGCAGGAATATCATGGGCATCTGTGGCGGAGAGGGTTGGCACAAGATCAGAGAAACAATGCCGGTCAAAATGGCTAAATTACTTAAACTGGAAAGAGAAGGGAGGACAAGAATGGACAAAGCAAGATGAAATTCAACTTATTACAAGAATCCAGGAAATGAATCTCCAAGATGAAAACGATATTGATTGGCAAGTTATGGCAAATAATTGGGCCAGtgtTCGCTCACCCCAGTGGCTTAGAAGCAAGTGGTGGGCATTGAAAAAACATGTTCCTGAAAGTGAAGCAACAACATTTGAAGGTATGTCTTCATATTTATACAACACATACATTGGAACACTCCGGAATAAAATTGAGAGGCAAGAAGCTCGGTTTAAAGGGAGTCACCTTCCAAGGCTGCATATTGTACCCGGAGGAAGAGGAGCTCGGGTTAATCCAACTGAAACCATAACAAATTCTGGAATCTCTCATACCATTACAGTGACTAGTGATGGTAGAGTAACAAGAGATGATCATACATATCCTCTCAGTAGCAGTCACAACAGATTTGAAATGGTGCAAGTCAGTGCCCTAACTGCACAAGATATTTTTAACAGTCAGTCATCTGTGCAAGGGGCACCATCATATATCATTCAAGCACCTGCAGGACAGACGTACATAATACAACAACCAACAGGGAACCTGGTAAGACAGGCACACACTGAGGAGTTAACAGGAGCATCTGAGGATCTCAACACAAGTCAACATGACCAGGAGGTTGTCATGACTACAGCTGTTCTTCAAGCACATCATGCAGTTCAAACCCTCCCAGCAGTTTCACCTGAGTTTACACAGGCAATAGTGCAGACTGATATCTCTGGGCCCATCACTGCATCTGAATTAGCAAATGCAGAGCTCACCCACTCAGACATTAGCAAATCTGTACCTGAGGATGAATTACAGGACAGTGAAGTTGTGCAGGATGATCTGCCTAATACTCTAGGTGATACTGTTGTGAACAGTGACACATTGGGTAGCCATGCAGATCTCACAGCTGATATTCAGATGGAAGGATCTAGTGAAAAGGGTGTGCCAGTTATAACACAATCAGGTCCTGCAGCAATTGCTCAAACCTTAGATGGTGACCAGCTCCCACACTCTCCTGTTGTACATATGCATCAAATTAGCTCACAAAACAGGGATGTTGACCCCCTTGTTCACGTGACTGTGATCTCAAGCATGGAAACGAGTCTATCATCAACTCTGTCACCTCCCTCTGGACTGACAATTTCCCAGCATGCTTTGTCAGGAAACAATAATTCAAATGACTTGTCTGTTAATGCCGTGGTACCTCAAGTTACTTTGCCAGACCAGATATTACAGTCACAATCAGATGAACCTACGGTACTGTCTCCCACGGAAACAACAAGTGTTATTATGGTAACTGAAAATTCAATGTCTGTTTCGTCCACATTGGAGCACACGGACACCTGGTTATCAAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y222	Cyclin-D-binding Myb-like transcription factor 1 OS=Homo sapiens OX=9606 GN=DMTF1 PE=1 SV=1
Q66HG1	Cyclin-D-binding Myb-like transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Dmtf1 PE=2 SV=2
Q8CE22	Cyclin-D-binding Myb-like transcription factor 1 OS=Mus musculus OX=10090 GN=Dmtf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001368 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF20588 all species →	DMTF1_N	Cyclin-D-binding Myb-like transcription factor 1 N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR051651 all species →	Family	DMTF1 DNA-binding transcriptional regulators	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR046775 all species →	Domain	Cyclin-D-binding Myb-like transcription factor 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46380 all species →	CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21625	DMTF1, DMP1; cyclin-D-binding Myb-like transcription factor 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6461.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

100.9Max TPM

39.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	41.98	94.40
whole organisms · low pH treatment	15	15	35.42	93.87
whole organisms · extra low pH treatment pH treatment	12	12	41.48	100.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	94.40
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	91.26
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	84.89
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	75.59
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	67.45
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	45.97
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	45.31
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	45.07
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	42.70
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	39.12
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	35.90
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	34.85
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	32.62
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	29.35
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	23.53
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	22.38
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	20.54
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	18.24
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	12.80
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	10.67
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	8.93
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	93.87
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	78.14
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	72.49
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	36.32
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	36.24
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	34.69
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	31.54
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	28.13
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	25.52
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	23.16
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	20.32
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	19.74
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	11.31
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	10.91
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	8.97
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	100.95
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	89.31
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	88.46
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	31.36
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	31.33
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	29.38
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	29.30
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	28.15
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	26.89
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	24.13
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	9.65
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	8.92

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.