Gene detail

Detailed information of g647.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAG9262442.1, hypothetical protein AMEX_G24216, partial [Astyanax mexicanus]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P19540	Coagulation factor IX OS=Canis lupus familiaris OX=9615 GN=F9 PE=1 SV=1
P00740	Coagulation factor IX OS=Homo sapiens OX=9606 GN=F9 PE=1 SV=2
Q95ND7	Coagulation factor IX OS=Pan troglodytes OX=9598 GN=F9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000024 (this species only)
Orthogroup (gene family)	OG0000197 (this species only)
Orthogroup (gene family)	OG0000219 (this species only)
Orthogroup (gene family)	OG0000812 (this species only)
Orthogroup (gene family)	OG0003095 (this species only)
Orthogroup (gene family)	OG0003329 (this species only)
Orthogroup (gene family)	OG0004573 (this species only)
Orthogroup (gene family)	OG0005743 (this species only)
Orthogroup (gene family)	OG0007325 (this species only)
Orthogroup (gene family)	OG0018747 (this species only)
Orthogroup (gene family)	OG0029702 (this species only)
Orthogroup (gene family)	OG0059597 (this species only)
Orthogroup (gene family)	OG0174577 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03623 all species →	Focal_AT	Focal adhesion targeting region	Domain	Interproscan
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF04147 all species →	Nop14	Nop14-like family	Family	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF18436 all species →	HECW1_helix	Helical box domain of E3 ubiquitin-protein ligase HECW1	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036137 all species →	Homologous_superfamily	Focal adhesion kinase, targeting (FAT) domain superfamily	Interproscan
IPR005189 all species →	Domain	Focal adhesion kinase, targeting (FAT) domain	Interproscan
IPR026103 all species →	Family	Harbinger transposase-derived nuclease, animal	Interproscan
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR007276 all species →	Family	Nucleolar protein 14	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR018488 all species →	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR043533 all species →	Family	Cyclic nucleotide-binding domain-containing protein 1/2	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR050705 all species →	Family	Cytochrome P450 3A	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR040524 all species →	Domain	E3 ubiquitin-protein ligase HECW1, helical box domain	Interproscan
IPR050409 all species →	Family	E3 ubiquitin-protein ligase	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22930 all species →	UNCHARACTERIZED	Interproscan
PTHR24253 all species →	TRANSMEMBRANE PROTEASE SERINE	Interproscan
PTHR23183 all species →	NOP14	Interproscan
PTHR47501 all species →	TRANSPOSASE-RELATED	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR23011 all species →	UNCHARACTERIZED	Interproscan
PTHR24302 all species →	CYTOCHROME P450 FAMILY 3	Interproscan
PTHR11254 all species →	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	Interproscan
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007172 all species →	Biological Process	signal complex assembly	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030692 all species →	Cellular Component	Noc4p-Nop14p complex	Interproscan
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0030552 all species →	Molecular Function	cAMP binding	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0008395 all species →	Molecular Function	steroid hydroxylase activity	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0048814 all species →	Biological Process	regulation of dendrite morphogenesis	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:2000650 all species →	Biological Process	negative regulation of sodium ion transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g647.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.