Gene detail

Detailed information of g6474.t1 in Montipora capitata

Genomic Location: Sc0000138:353387...361059
NR annotation: XP_015761838.1, PREDICTED: G2 and S phase-expressed protein 1-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6474.t1

atggcggtatcaagttgtgaagggttttcctgtaatgttgatggcgcagtcgatctcatagaggatgaaaaattcgattttgatgtaccaatctctccaactgtgtgtgatggcagtgtagcaaagcatgatttggaagacgaggatgaagtgttttttgggcccattggtcacaaagagagatgtgtaacagtcaacagtgatttgcatgctgattacaagccgatgagccccctaaatggtgaacagattgctgaacttttcaaagaggccacagctgtttctttgttcatcaaaagtcaaagcctgagctgtaatgcagatgagagtaaagaaaatgaaaatggggaaaattgtatcactttatcaaaaacatttaccgttgaagaagaccagaatgataattgtctagcagagaagccagaccagctaaatgacttgagtttcactaaagaatcaagatctccaccagagacaatctcagagtataataattcatcaatgcctgactgttcaattggtttaagagttcctacaacaccaaaccgtgtcttgcgtgagagcaattctcaagttcagccaagtatgccattaccatcaccattcaaagcacgagaagctcgtccattagccaatgtttccaaatttgcaaggtccaaacttcccaaaactcaaatgactctgaagactcgaagctgttttaattcacctataaaagcagagcatgtttatggaattatagagccctgttcagacaaggttcaggtcaagtcaggctgtaatggtttgtcacccataaagactagagaaccaagagatagtcatggccaaacttcaaacaagggagattcctcatttacagagccatccaagttacgtttttcatctcaaagtggcataaagccaccaggatttgttgtgcaaccgaggcgccgccgcacaagctccacttcgtcagcctcttcactttcaagtgcattgtcacaatcaaatcctgatctgaatgagacgttcaccatccttgattcttctgtttctgatgcatcgttgattccttctgcctgtgcacgtaaggttcctacaacaaaagctagtctgaagcctttaactggaagtagtgcgctgtcaaaaagagggtcaagtgttatcaaacccaaagggaaaccacaacctgtgaaagcattgccacaatctgggaaagttagcaccaaaaaggctccacagatttcaaggtcacttggcagtacaccaggaaagcaaaagggtaatggaatgtcagatcaaacactgaggaaacctcgtacacccagtgaagttcaaagatcaaagtcatttacaactcctagaaaagcaagctttacaaccaatgagcatcagaagggcagtttgaactctgagcagcttgtggataactgtcgtcagacacccagtgcagtacaaaggtccaaatcctttactacgccaaataatgctgctgcaaaaaacaggagcagcatttcagttagacttacaccatccaaagaaaaggaccctggactgccagcaacacccaggaggagagcaagcaacaaaacaacaccaagaaagagcctgactaccgttccaacacctgtgcgaagacgtggcagtgctgtggacacttgtgcaacaagtaaagcaggcccttctcaggctcagaccagaagcaaagctcttctcaggccctccactcccaatggtggtagttctgaggttaaggctgttgttactccacctaatgaggttcccagcaaggttatgaaaaggaagtctctgagtgcaggtggacagaagcgaggttctcttctccccacccccatgaggaataacaaagttagaaaatcacagtcccagaagttgaattcaagctcaaaaaagtttggctctcaggggtgtcttccattcaacatctcgccatcttcagagtccattgtgccaagaattgccgggggatcctcagattctcctgtacatgcaaaagctgaggttttgaagtcaacttccagtttatctgatcccttctctccagtacctcagacaatttctgctcatccagtcattgattcttgtgccagtggagattcacttccaacaaatttgattgaactgtcacccaccttgccaactgaaggaaatcttattgacttgtga

Transcript

g6474.t1

ATGGCGGTATCAAGTTGTGAAGGGTTTTCCTGTAATGTTGATGGCGCAGTCGATCTCATAGAGGATGAAAAATTCGATTTTGATGTACCAATCTCTCCAACTGTGTGTGATGGCAGTGTAGCAAAGCATGATTTGGAAGACGAGGATGAAGTGTTTTTTGGGCCCATTGGTCACAAAGAGAGATGTGTAACAGTCAACAGTGATTTGCATGCTGATTACAAGCCGATGAGCCCCCTAAATGGTGAACAGATTGCTGAACTTTTCAAAGAGGCCACAGCTGTTTCTTTGTTCATCAAAAGTCAAAGCCTGAGCTGTAATGCAGATGAGagtaaagaaaatgaaaatgggGAAAATTGTATCACTTTATCAAAAACATTTACCGTTGAAGAAGACCAGAATGATAATTGTCTAGCAGAGAAGCCAGACCAGCTAAATGACTTGAGTTTCACTAAAGAATCAAGATCTCCACCAGAGACAATCTCAGAGTATAATAATTCATCAATGCCTGACTGTTCAATTGGTTTAAGAGTTCCTACAACACCAAACCGTGTCTTGCGTGAGAGCAATTCTCAAGTTCAGCCAAGTATGCCATTACCATCACCATTCAAAGCACGAGAAGCTCGTCCATTAGCCAATGTTTCCAAATTTGCAAGGTCCAAACTTCCCAAAACTCAAATGACTCTGAAGACTCGAAGCTGTTTTAATTCACCTATAAAAGCAGAGCATGTTTATGGAATTATAGAGCCCTGTTCAGACaagGTTCAGGTCAAGTCAGGCTGTAATGGTTTGTCACCCATAAAGACTAGAGAACCAAGAGATAGTCATGGCCAAACTTCAAACAAGGGAGATTCCTCATTTACAGAGCCATCCAAGTTACGTTTTTCATCTCAAAGTGGCATAAAGCCACCAGGATTTGTTGTGCAACCGAGGCGCCGCCGCACAAGCTCCACTTCGTCAGCCTCTTCACTTTCAAGTGCATTGTCACAATCAAATCCTGATCTGAATGAGACGTTCACCATCCTTGATTCTTCTGTTTCTGATGCATCGTTGATTCCTTCTGCCTGTGCACGTAAGGTTCCTACAACAAAAGCTAGTCTGAAGCCTTTAACTGGAAGTAGTGCGCTGTCAAAAAGAGGGTCAAGTGTTATCAAACCCAAAGGGAAACCACAACCTGTGAAAGCATTGCCACAATCTGGGAAAGTTAGCACCAAAAAGGCTCCACAGATTTCAAGGTCACTTGGCAGTACACCAGGAAAGCAAAAGGGTAATGGAATGTCAGATCAAACACTGAGGAAACCTCGTACACCCAGTGAAGTTCAAAGATCAAAGTCATTTACAACTCCTAGAAAAGCAAGCTTTACAACCAATGAGCATCAGAAGGGCAGTTTGAACTCTGAGCAGCTTGTGGATAACTGTCGTCAGACACCCAGTGCAGTACAAAGGTCCAAATCCTTTACTACGCCAAATAATGCTGCTGCAAAAAACAGGAGCAGCATTTCAGTTAGACTTACACCATCCAAAGAAAAGGACCCTGGACTGCCAGCAACACCCAGGAGGAGAGCAAGCAACAAAACAACACCAAGAAAGAGCCTGACTACCGTTCCAACACCTGTGCGAAGACGTGGCAGTGCTGTGGACACTTGTGCAACAAGTAAAGCAGGCCCTTCTCAGGCTCAGACCAGAAGCAAAGCTCTTCTCAGGCCCTCCACTCCCAATGGTGGTAGTTCTGAGGTTAAGGCTGTTGTTACTCCACCTAATGAGGTTCCCAGCAAGGTTATGAAAAGGAAGTCTCTGAGTGCAGGTGGACAGAAGCGAGGTTCTCTTCTCCCCACCCCCATGAGGAATAACAAAGTTAGAAAATCACAGTCCCAGAAGTTGAATTCAAGCTCAAAAAAGTTTGGCTCTCAGGGGTGTCTTCCATTCAACATCTCGCCATCTTCAGAGTCCATTGTGCCAAGAATTGCCGGGGGATCCTCAGATTCTCCTGTACATGCAAAAGCTGAGGTTTTGAAGTCAACTTCCAGTTTATCTGATCCCTTCTCTCCAGTACCTCAGACAATTTCTGCTCATCCAGTCATTGATTCTTGTGCCAGTGGAGATTCACTTCCAACAAATTTGATTGAACTGTCACCCACCTTGCCAACTGAAGGAAATCTTATTGACTTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R080	G2 and S phase-expressed protein 1 OS=Mus musculus OX=10090 GN=Gtse1 PE=1 SV=2
Q9NYZ3	G2 and S phase-expressed protein 1 OS=Homo sapiens OX=9606 GN=GTSE1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009200 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15259 all species →	GTSE1_N	G-2 and S-phase expressed 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026657 all species →	Family	Proline/serine-rich coiled-coil protein 1/G2 and S phase-expressed protein 1	Interproscan
IPR032768 all species →	Domain	G2 and S phase-expressed protein 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21584 all species →	DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10129	GTSE1, B99; G-2 and S-phase expressed protein 1	-	p53 signaling pathway	ko04115	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6474.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

66.8Max TPM

26.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	27.22	66.43
whole organisms · low pH treatment	15	15	27.40	66.76
whole organisms · extra low pH treatment pH treatment	12	12	24.00	62.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	66.43
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	65.17
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	63.98
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	42.48
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	38.66
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	37.85
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	34.71
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	31.14
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	28.80
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	28.69
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	27.21
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	20.75
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	16.40
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	13.27
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	10.50
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	9.05
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	8.07
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	7.94
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	7.81
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	6.97
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	5.66
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	66.76
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	64.64
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	60.71
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	43.63
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	32.99
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	31.21
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	25.58
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	19.66
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	11.39
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	11.09
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.67
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	8.75
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	8.14
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	8.00
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	7.76
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	62.31
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	56.80
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	37.00
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	32.40
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	25.63
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	16.77
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	11.56
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	10.23
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	10.00
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	9.01
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	8.51
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	7.83

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.