Gene detail

Detailed information of g6476.t2 in Acropora digitifera

Genomic Location: chr3Alt:19095741...19109320
NR annotation: XP_015748808.1, PREDICTED: uncharacterized protein LOC107328606 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6476.t2

ATGGCTTTTGTATACCACCACATGTGCACACCCTGTCGTTGTGGTCTTTTGTTTACTATCGTCGTTTTCTTTTGTCCATTCATCGCGTTTTCTCAAGATATGCTGCCCTCTCCAATTGGACTGTATCCATTCAATAACCTTTACAAAACTGCAGATGCCAGCTGCTATGGTAACTTACATGGAATGCCCCAAGATGTTGAGCTTGTAGGGGGACCATTTCATAAGCAATGTGCGGCTTATCAGTTTACAGGGACAAGCTGCATTCATATTCCAGGAAGTCGTCATTTCAATGAAAATATAAGGTCTATAACAATTTTAGTTTGGATATTTCAGACTGGGCATGCTGGATCCATTGTAAACTTTAATAGTAATGAAAGCAATGAAGGTAGTGAAGTTTATGGAAGAAGTCCTGTTTCTGTTGAAATTCGCACATCTGGGAGTTCGTCTATTTCTGCTGATTTGGCCGGAAATGATGGAAGAAGGGTCCATCTATGGAGCAACAGTTCTGAAGCTCTTGCAAATGAGTGGCGTTACATTGGAGTCTCATATGACCACTCAAGCCGGGAGGTGATAATGTGGGTTGATGGTGAGGATGTGGACCACTTATTGATCCTTAAAAATCTTGACTTGAGCACTGACAGAAGCATTCAGATAGGTGGAAGACAAGGAAAACAAGACAGTTTTGAGGGGCGTATATCATGTCTCCAGGTCTATGACAGAGCATTATCAAAAAAGGAGGTGAAAGCTGTCAGGAATAGGTGCTTCAGGGATAATCAGGCACCAGTCGACTGTTCTAATATAAAAGCACCAGAACATTGTGGTTTGTTTTTGAACACCTTGTCGGGAAGGTTTTCATCCCCAGGGTACCCAACTGGTTATCCTTACAATGCCAAGTGCGTGTGGGAGATCAAGGTTCCAAAAGGATATTTCATCACTTTGAAATTTGAATACTTTGATTTGGGGGATTCGAGTTGCGCGGATCACGTTCTTGTTCGAGATGGCATTAACAGCTGGTCCAAGAAGATAATGTCAGTTTGTGGTGGTCAGGATGTAACTAAACTCGTGGTTAGTTCGTTTGGGAGTGGAATGAGAGTGGAATTTGTATCTGACAAGCAAATTTCGGCATCAGGATTTCTTGCTTCGTACACGTCACATCTTATCGCTAGCAATGCGAGTAATGAGGACGATAGACTTGACTTCAGCCGTCATTACACAGGCATCGTAATAGGCGTGGCTTGTGCCGCAATTTTCGCTATTTTCTCCGTCATTGCCTTCAGTCACGCGAGGAGCCGATTACGGGAGCGTCGCAGTGGCAGGAGCTTAACTCGTAGTAATCGTCAATCTGTGTCGTTCACCGAAGACGATGTCATTCAACTGAACGCCCCGCCAACTTATGATGATGTTATGCGCTATCCGGAACTTTACCCACCCACCCCTCTCCAAGGATCACTAACCAACACACCAGTGGGGACTCCCCGCATGGCCTCCCCAATCTCAACACCATCGACATCTCGCCGTGTGCCACACAGGCCAGGATCCCCAGCTGTATTACCGAATGTGGGAACACCAATCGGGATGCCTCTTTTCAATCCACGTCGCCTCGGTCAAAGCACCTCTCACACTGCGTCAAGGGTCTCTTTACAGAGAGGCGTATCTCCCCTGGCAAGGGCGGAGTTTAGCCCGCAGATTTCGCGTCAAACGGATCATGTCTCGACAGATGAACTTAACAACAGTGAAGAGGACGAGGATGACGAGTTGCCTCCATACCCGGGCACCAGAAGTGTTGATTCAGTCTTGGATCAAGTAAGAGAGACATTGCAGTACAGTGGGTTTGCTTCGAGTCAAGTTTCCAACCCTTCTTTAAGTGACAATACTTCTGTAATAAGGTCTACGAATCCTGCGGCTGGTGCAGCCCACGAAAACACGAGCCCTTCGTTGCCGAGTTTAAGCAAGAGCGACGGCAACGGAAAAGACAATGCCAGAAAACAATGCGATGAACTTTAA

Transcript

chr3Alt.g6476.t2

AGTTGTTGCAAACTTATGTTTTGTCAGAGCAACTTCCTGAAATTCTTCTGTCGGTTTTGTATGGATAGACGTCTGTTCGAATGTCCTTTGAAGTGGAGAAAACACGGATGTTTAGATAAAAAAAACTACCGAACTAACTAGGCTGGATTGAAAGTCTACGCGTACGTATAATCGGGTATAATGAAACACGAAACTGCCTGGAAGTTACACCCCTAAACGAGCTCGATCTTTCAAGACACTAATCATAGACACGAAGTGAGACGTTTGAGCACATAAAAGGTCATCGAGTGCCGAATAGAATCGCAATGGCTTTTGTATACCACCACATGTGCACACCCTGTCGTTGTGGTCTTTTGTTTACTATCGTCGTTTTCTTTTGTCCATTCATCGCGTTTTCTCAAGATATGCTGCCCTCTCCAATTGGACTGTATCCATTCAATAACCTTTACAAAACTGCAGATGCCAGCTGCTATGGTAACTTACATGGAATGCCCCAAGATGTTGAGCTTGTAGGGGGACCATTTCATAAGCAATGTGCGGCTTATCAGTTTACAGGGACAAGCTGCATTCATATTCCAGGAAGTCGTCATTTCAATGAAAATATAAGGTCTATAACAATTTTAGTTTGGATATTTCAGACTGGGCATGCTGGATCCATTGTAAACTTTAATAGTAATGAAAGCAATGAAGGTAGTGAAGTTTATGGAAGAAGTCCTGTTTCTGTTGAAATTCGCACATCTGGGAGTTCGTCTATTTCTGCTGATTTGGCCGGAAATGATGGAAGAAGGGTCCATCTATGGAGCAACAGTTCTGAAGCTCTTGCAAATGAGTGGCGTTACATTGGAGTCTCATATGACCACTCAAGCCGGGAGGTGATAATGTGGGTTGATGGTGAGGATGTGGACCACTTATTGATCCTTAAAAATCTTGACTTGAGCACTGACAGAAGCATTCAGATAGGTGGAAGACAAGGAAAACAAGACAGTTTTGAGGGGCGTATATCATGTCTCCAGGTCTATGACAGAGCATTATCAAAAAAGGAGGTGAAAGCTGTCAGGAATAGGTGCTTCAGGGATAATCAGGCACCAGTCGACTGTTCTAATATAAAAGCACCAGAACATTGTGGTTTGTTTTTGAACACCTTGTCGGGAAGGTTTTCATCCCCAGGGTACCCAACTGGTTATCCTTACAATGCCAAGTGCGTGTGGGAGATCAAGGTTCCAAAAGGATATTTCATCACTTTGAAATTTGAATACTTTGATTTGGGGGATTCGAGTTGCGCGGATCACGTTCTTGTTCGAGATGGCATTAACAGCTGGTCCAAGAAGATAATGTCAGTTTGTGGTGGTCAGGATGTAACTAAACTCGTGGTTAGTTCGTTTGGGAGTGGAATGAGAGTGGAATTTGTATCTGACAAGCAAATTTCGGCATCAGGATTTCTTGCTTCGTACACGTCACATCTTATCGCTAGCAATGCGAGTAATGAGGACGATAGACTTGACTTCAGCCGTCATTACACAGGCATCGTAATAGGCGTGGCTTGTGCCGCAATTTTCGCTATTTTCTCCGTCATTGCCTTCAGTCACGCGAGGAGCCGATTACGGGAGCGTCGCAGTGGCAGGAGCTTAACTCGTAGTAATCGTCAATCTGTGTCGTTCACCGAAGACGATGTCATTCAACTGAACGCCCCGCCAACTTATGATGATGTTATGCGCTATCCGGAACTTTACCCACCCACCCCTCTCCAAGGATCACTAACCAACACACCAGTGGGGACTCCCCGCATGGCCTCCCCAATCTCAACACCATCGACATCTCGCCGTGTGCCACACAGGCCAGGATCCCCAGCTGTATTACCGAATGTGGGAACACCAATCGGGATGCCTCTTTTCAATCCACGTCGCCTCGGTCAAAGCACCTCTCACACTGCGTCAAGGGTCTCTTTACAGAGAGGCGTATCTCCCCTGGCAAGGGCGGAGTTTAGCCCGCAGATTTCGCGTCAAACGGATCATGTCTCGACAGATGAACTTAACAACAGTGAAGAGGACGAGGATGACGAGTTGCCTCCATACCCGGGCACCAGAAGTGTTGATTCAGTCTTGGATCAAGTAAGAGAGACATTGCAGTACAGTGGGTTTGCTTCGAGTCAAGTTTCCAACCCTTCTTTAAGTGACAATACTTCTGTAATAAGGTCTACGAATCCTGCGGCTGGTGCAGCCCACGAAAACACGAGCCCTTCGTTGCCGAGTTTAAGCAAGAGCGACGGCAACGGAAAAGACAATGCCAGAAAACAATGCGATGAACTTTAATCTCTTGATAAATATACTACTTATTACAATAAAAGCTATATTAAAAACGTGTAATATTAATAAAAATGTATTTACAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60997	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Mus musculus OX=10090 GN=Dmbt1 PE=1 SV=2
Q8BQH6	CUB domain-containing protein 2 OS=Mus musculus OX=10090 GN=Cdcp2 PE=2 SV=2
Q8BZE1	Putative DMBT1-like protein OS=Mus musculus OX=10090 GN=Cdcp3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47635 all species →	CUB DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g6476.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g6476.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6476.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.