Gene detail

Detailed information of g6486.t1.1 in Haliclystus octoradiatus

Genomic Location: not available for this species
NR annotation: AAB87751.1, voltage-gated calcium channel beta subunit [Cyanea capillata]
Species abbreviation HOCTO · all data for this species · gene families

Sequence

CDS

g6486.t1

ATGGAAAACCATGGGTTTGCCTATGAAGATgaacaatatttcaataaaaataaagtcGAAAGTAGATATGATATTAATAGTATAATTGTATCTAATGAATCTACTACAGAAGATGATAAAGATGCTATAAATTCAAGTCATCGTCGTTCTTCATCAATGATTGGTGATGTTTTTAGACCAACTATAAGAAAAAGGACATTAACACCAAATAATTCACAACTCACAATACCAACCGTAGCATTACACAGGACAAATTCATTACCAGATAATGTCAACAGAAATGCTAATAGTACGTCCAATTCTCCAATTAATCTGAGAGCAGATAGCAGATCATTGTCAGCTATTGGGTCACCGATTGCTCGTATAACCTCATTACATCGAAATGGatcaaataattcaaatcaatttggTTCTGCTACAAGTTTTCAAAGTCTAAATTCTATTTCAAGTGATGGTGGCAGAAACACACCGCCtgttattaatataaattattggaATGTATTTAATGATGGCAAGTTAGCCCTTTCACGACAATCAAGTGCAGGAAGTATCGCTTCTGACCAACCAGAATCCACCTCTTCTTCACCATATCCAGGACAGAACGAGGACTTTGACCTAGACGAAACCGGAGAAGAGGTTAATGAAATTCCAAGTTACTCTATTAACGTAGAAGGTGCTTTAGACGGAAAGAACTTCTCATTTGGTCCGTTTCATAATATACTTTCACCAAAACAGGATCATTTTCTTGAGggTGATGAATTAGATAGTAGAAAAGCGTCAGGAACTTCATCTGAATATGGCGAAGAGGAACTGGAGCAAATGCGAATACAAGCGCTAGAACAGCTCACAATTGCACGGAACAAACCGGTGGCGTTTGCAATGAGAGCCAATTACGGTTTCAACGGAACTGAAGATGACGATTCACCGGTTCACGGAATGGCATTATCATTCGACGCTAAGGATTTCTTACATATAAAAGAGaaatttaataatgattGGTGGGTTGGTCGAGTTGTAAGGGAAGGATGCGATATTGGTTTTATTCCAAgTCCTGGTAAACTTGATCGTCTGCGGCAAGCAAGTCTAGCTGGTCGTAAAATGAGGCAATCGAGTACGAGCAGTAACCTACATTTGCAAGGCGCTTCAGACTCAACATCAAGAATCAATTCCGTCTCATCTCCTgTTGATGAGCGACAGAATTCTTTCGAAGATGACAGTAATCCAACGTCCCCAGTCCGTTCTGGTACGGGGACGACAACGACGGGTAACAAACCCAAGAAAGGCATCTTCAAAAAGAACGAGACCCTACCTCCTTATGACGTTGTTCCATCTGTACGCCCTGTGATTTTCGTTGGACCTTCACTCAAAGGATATGAGGTCACTGATATGATGCAAAAAGCTCTGTTTGATTATCTAAGACATCGCTTTCAGGGCAGAATTGCTGTAACACGTGTCACGGCTGATATCAGTTTAGCAAAACGTTCAACTTTACAAAATCCTGGCAAATGGAATTCTATTGATAAAAAGACGTCAAATACGGGCTCAGGAATCGCTGAAGTTTCGCAAGAAGTCGAACGAATTTTCGATCTGTGCCGCAATCTTCAATTGGTTGTTTTGGATTGTGACACGGTTAATCATCCATCACAAGTGGCGAAAACATCCCTCGTACCCATCGTTGTCTATATCAAAATTGCATCGCCAAAGGTATTAACACGATTAATAAAATCACGTGGTAAATCCCAATCCAAGAATCTAAACGTTCAACTTGTCGCTGCTGAAAAACTAGCACAGTGCAACGAGGATTCTTTCGATATCATCTTGGCTGAGAATCAACTCGAGGACGCATGCGAGCATCTTGGTGAATTCCTTGAAGCCTATTGGAGAGCAACACATCCTCCACAAGCCAGTTACGTGCCACCTGGGCAGCCTGTTATGGTCACGTATAATGGAGTGGATCCATTTAGTACCCAATCTCCGACGCGGCATCTACGAACGGCACAAGTTTAA

Transcript

g6486.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9MZL5	Voltage-dependent L-type calcium channel subunit beta-2 OS=Bos taurus OX=9913 GN=CACNB2 PE=2 SV=1
P54288	Voltage-dependent L-type calcium channel subunit beta-2 OS=Oryctolagus cuniculus OX=9986 GN=CACNB2 PE=1 SV=1
Q08289	Voltage-dependent L-type calcium channel subunit beta-2 OS=Homo sapiens OX=9606 GN=CACNB2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000584 all species →	Family	Voltage-dependent calcium channel, L-type, beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11824 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04863	CACNB2; voltage-dependent calcium channel beta-2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.