Detailed information of g650.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: GFR62201.1, endonuclease-reverse transcriptase [Elysia marginata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q2G5P7Probable transaldolase OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=tal PE=3 SV=1
Q2N908Probable transaldolase OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=tal PE=3 SV=1
A5V2S4Probable transaldolase OS=Rhizorhabdus wittichii (strain DSM 6014 / CCUG 31198 / JCM 15750 / NBRC 105917 / EY 4224 / RW1) OX=392499 GN=tal PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11798IMS_HHHIMS family HHH motifMotifInterproscan
PF00817IMSimpB/mucB/samB familyFamilyInterproscan
PF11799IMS_CimpB/mucB/samB family C-terminal domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00589Phage_integrasePhage integrase familyFamilyInterproscan
PF02899Phage_int_SAM_1Phage integrase, N-terminal SAM-like domainDomainInterproscan
PF00923TAL_FSATransaldolase/Fructose-6-phosphate aldolaseDomainInterproscan
PF05649Peptidase_M13_NPeptidase family M13FamilyInterproscan
PF00158Sigma54_activatSigma-54 interaction domainDomainInterproscan
PF02954HTH_8Bacterial regulatory protein, Fis familyDomainInterproscan
PF00072Response_regResponse regulator receiver domainDomainInterproscan
PF13613HTH_Tnp_4Helix-turn-helix of DDE superfamily endonucleaseDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036775Homologous_superfamilyDNA polymerase, Y-family, little finger domain superfamilyInterproscan
IPR024728Conserved_siteDNA polymerase type-Y, HhH motifInterproscan
IPR050116FamilyDNA polymerase type-YInterproscan
IPR022880FamilyDNA polymerase IVInterproscan
IPR001126DomainUmuC domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR017961DomainDNA polymerase, Y-family, little finger domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR006642DomainRad18, zinc finger UBZ4-typeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR037524DomainPA14/GLEYA domainInterproscan
IPR052387FamilyFibrocystin-related proteinInterproscan
IPR018225Active_siteTransaldolase, active siteInterproscan
IPR001585FamilyTransaldolase/Fructose-6-phosphate aldolaseInterproscan
IPR013762Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR002104DomainIntegrase, catalytic domainInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR004107DomainIntegrase, SAM-like, N-terminalInterproscan
IPR004731FamilyTransaldolase type 3B/Fructose-6-phosphate aldolaseInterproscan
IPR033919FamilyTransaldolase/Fructose-6-phosphate aldolase, archaeal/bacterialInterproscan
IPR044068DomainCore-binding (CB) domainInterproscan
IPR011010Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan
IPR042089Homologous_superfamilyPeptidase M13, domain 2Interproscan
IPR000718FamilyPeptidase M13Interproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR008753DomainPeptidase M13, N-terminal domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR002078DomainRNA polymerase sigma factor 54 interaction domainInterproscan
IPR001789DomainSignal transduction response regulator, receiver domainInterproscan
IPR025943Binding_siteSigma-54 interaction domain, ATP-binding site 2Interproscan
IPR002197DomainDNA binding HTH domain, Fis-typeInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR025944Conserved_siteSigma-54 interaction domain, conserved siteInterproscan
IPR011006Homologous_superfamilyCheY-like superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051941FamilyBlood Group Antigen-Binding LectinInterproscan
IPR006585DomainFucolectin tachylectin-4 pentraxin-1Interproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR027805DomainTransposase, Helix-turn-helix domainInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11076DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBERInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR46769POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1Interproscan
PTHR10683TRANSALDOLASEInterproscan
PTHR11733ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATEDInterproscan
PTHR32071TRANSCRIPTIONAL REGULATORY PROTEINInterproscan
PTHR45713FTP DOMAIN-CONTAINING PROTEINInterproscan
PTHR23080THAP DOMAIN PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0042276Biological Processerror-prone translesion synthesisInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0016832Molecular Functionaldehyde-lyase activityInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016485Biological Processprotein processingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0000160Biological Processphosphorelay signal transduction systemInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03511POLK; DNA polymerase kappaEC:2.7.7.7
DNA repair and recombination proteinsko03400deepkoala

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