Gene detail

Detailed information of g652.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_032227960.2, semaphorin-3B isoform X2 [Nematostella vectensis]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NPR2	Semaphorin-4B OS=Homo sapiens OX=9606 GN=SEMA4B PE=1 SV=4
Q9Z0L8	Gamma-glutamyl hydrolase OS=Mus musculus OX=10090 GN=Ggh PE=1 SV=2
Q92820	Gamma-glutamyl hydrolase OS=Homo sapiens OX=9606 GN=GGH PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000008 (this species only)
Orthogroup (gene family)	OG0000015 (this species only)
Orthogroup (gene family)	OG0000114 (this species only)
Orthogroup (gene family)	OG0000428 (this species only)
Orthogroup (gene family)	OG0000654 (this species only)
Orthogroup (gene family)	OG0001172 (this species only)
Orthogroup (gene family)	OG0002214 (this species only)
Orthogroup (gene family)	OG0002518 (this species only)
Orthogroup (gene family)	OG0003209 (this species only)
Orthogroup (gene family)	OG0003880 (this species only)
Orthogroup (gene family)	OG0022261 (this species only)
Orthogroup (gene family)	OG0029672 (this species only)
Orthogroup (gene family)	OG0171189 (this species only)
Orthogroup (gene family)	OG0172282 (this species only)
Orthogroup (gene family)	OG0173345 (this species only)
Transcription factor family	bHLH · all TF in this species
Transcription factor family	THAP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01056 all species →	Myc_N	Myc amino-terminal region	Family	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF10516 all species →	SHNi-TPR	SHNi-TPR	Repeat	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF04452 all species →	Methyltrans_RNA	RNA methyltransferase domain	Domain	Interproscan
PF20260 all species →	PUA_4	RNA methyltransferase PUA domain	Domain	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF07528 all species →	DZF_N	DZF N-terminal domain	Domain	Interproscan
PF20965 all species →	DZF_C	DZF C-terminal domain	Domain	Interproscan
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan
PF07722 all species →	Peptidase_C26	Peptidase C26	Domain	Interproscan
PF00024 all species →	PAN_1	PAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR002418 all species →	Family	Transcription regulator Myc	Interproscan
IPR012682 all species →	Domain	Transcription regulator Myc, N-terminal	Interproscan
IPR050433 all species →	Family	Myc family transcription factors	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR019544 all species →	Domain	Tetratricopeptide, SHNi-TPR domain	Interproscan
IPR051730 all species →	Family	Nuclear Autoantigenic Sperm-associated Protein	Interproscan
IPR051336 all species →	Family	Rho GTPase-activating Guanine Nucleotide Exchange Factors	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR027231 all species →	Family	Semaphorin	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR029026 all species →	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR029028 all species →	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR046886 all species →	Domain	Ribosomal RNA small subunit methyltransferase E, methyltransferase domain	Interproscan
IPR006700 all species →	Family	Ribosomal RNA small subunit methyltransferase E	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR046887 all species →	Domain	Ribosomal RNA small subunit methyltransferase E, PUA-like domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR000690 all species →	Domain	Matrin/U1-C, C2H2-type zinc finger	Interproscan
IPR049401 all species →	Domain	DZF domain, N-terminal	Interproscan
IPR006561 all species →	Domain	DZF domain	Interproscan
IPR049402 all species →	Domain	DZF domain, C-terminal	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR015527 all species →	Family	Peptidase C26, gamma-glutamyl hydrolase	Interproscan
IPR011697 all species →	Family	Peptidase C26	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45851 all species →	MYC PROTO-ONCOGENE	Interproscan
PTHR15081 all species →	NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED	Interproscan
PTHR22826 all species →	RHO GUANINE EXCHANGE FACTOR-RELATED	Interproscan
PTHR11036 all species →	SEMAPHORIN	Interproscan
PTHR30027 all species →	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E	Interproscan
PTHR45762 all species →	ZINC FINGER RNA-BINDING PROTEIN	Interproscan
PTHR23080 all species →	THAP DOMAIN PROTEIN	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR11315 all species →	PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006335 all species →	Biological Process	DNA replication-dependent chromatin assembly	Interproscan
GO:0034080 all species →	Biological Process	CENP-A containing chromatin assembly	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0001755 all species →	Biological Process	neural crest cell migration	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030215 all species →	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335 all species →	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499 all species →	Molecular Function	chemorepellent activity	Interproscan
GO:0048843 all species →	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919 all species →	Biological Process	negative chemotaxis	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0070042 all species →	Molecular Function	rRNA (uridine-N3-)-methyltransferase activity	Interproscan
GO:0070475 all species →	Biological Process	rRNA base methylation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0008242 all species →	Molecular Function	omega peptidase activity	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan
GO:0034722 all species →	Molecular Function	gamma-glutamyl-peptidase activity	Interproscan
GO:0046900 all species →	Biological Process	tetrahydrofolylpolyglutamate metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01307	GGH; gamma-glutamyl hydrolase	EC:3.4.19.9	Peptidases and inhibitors	ko01002	deepkoala
K04377	MYC; Myc proto-oncogene protein	-	Messenger RNA biogenesis	ko03019	deepkoala
K13203	ZFR; zinc finger RNA-binding protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.