Detailed information of g652.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_032227960.2, semaphorin-3B isoform X2 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9NPR2Semaphorin-4B OS=Homo sapiens OX=9606 GN=SEMA4B PE=1 SV=4
Q9Z0L8Gamma-glutamyl hydrolase OS=Mus musculus OX=10090 GN=Ggh PE=1 SV=2
Q92820Gamma-glutamyl hydrolase OS=Homo sapiens OX=9606 GN=GGH PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilybHLH
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01056Myc_NMyc amino-terminal regionFamilyInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF10516SHNi-TPRSHNi-TPRRepeatInterproscan
PF00435SpectrinSpectrin repeatDomainInterproscan
PF01437PSIPlexin repeatFamilyInterproscan
PF01403SemaSema domainRepeatInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF04452Methyltrans_RNARNA methyltransferase domainDomainInterproscan
PF20260PUA_4RNA methyltransferase PUA domainDomainInterproscan
PF12874zf-metZinc-finger of C2H2 typeDomainInterproscan
PF07528DZF_NDZF N-terminal domainDomainInterproscan
PF20965DZF_CDZF C-terminal domainDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF07722Peptidase_C26Peptidase C26DomainInterproscan
PF00024PAN_1PAN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR002418FamilyTranscription regulator MycInterproscan
IPR012682DomainTranscription regulator Myc, N-terminalInterproscan
IPR050433FamilyMyc family transcription factorsInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR019544DomainTetratricopeptide, SHNi-TPR domainInterproscan
IPR051730FamilyNuclear Autoantigenic Sperm-associated ProteinInterproscan
IPR051336FamilyRho GTPase-activating Guanine Nucleotide Exchange FactorsInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR002165RepeatPlexin repeatInterproscan
IPR016201DomainPSI domainInterproscan
IPR001627DomainSema domainInterproscan
IPR027231FamilySemaphorinInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR036352Homologous_superfamilySema domain superfamilyInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR029026Homologous_superfamilytRNA (guanine-N1-)-methyltransferase, N-terminalInterproscan
IPR029028Homologous_superfamilyAlpha/beta knot methyltransferasesInterproscan
IPR046886DomainRibosomal RNA small subunit methyltransferase E, methyltransferase domainInterproscan
IPR006700FamilyRibosomal RNA small subunit methyltransferase EInterproscan
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR046887DomainRibosomal RNA small subunit methyltransferase E, PUA-like domainInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR003604DomainMatrin/U1-C-like, C2H2-type zinc fingerInterproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR000690DomainMatrin/U1-C, C2H2-type zinc fingerInterproscan
IPR049401DomainDZF domain, N-terminalInterproscan
IPR006561DomainDZF domainInterproscan
IPR049402DomainDZF domain, C-terminalInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR029062Homologous_superfamilyClass I glutamine amidotransferase-likeInterproscan
IPR015527FamilyPeptidase C26, gamma-glutamyl hydrolaseInterproscan
IPR011697FamilyPeptidase C26Interproscan
IPR003609DomainPAN/Apple domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45851MYC PROTO-ONCOGENEInterproscan
PTHR15081NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATEDInterproscan
PTHR22826RHO GUANINE EXCHANGE FACTOR-RELATEDInterproscan
PTHR11036SEMAPHORINInterproscan
PTHR30027RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE EInterproscan
PTHR45762ZINC FINGER RNA-BINDING PROTEINInterproscan
PTHR23080THAP DOMAIN PROTEINInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR11315PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0006335Biological ProcessDNA replication-dependent chromatin assemblyInterproscan
GO:0034080Biological ProcessCENP-A containing chromatin assemblyInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0001755Biological Processneural crest cell migrationInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007411Biological Processaxon guidanceInterproscan
GO:0030215Molecular Functionsemaphorin receptor bindingInterproscan
GO:0030335Biological Processpositive regulation of cell migrationInterproscan
GO:0045499Molecular Functionchemorepellent activityInterproscan
GO:0048843Biological Processnegative regulation of axon extension involved in axon guidanceInterproscan
GO:0050919Biological Processnegative chemotaxisInterproscan
GO:0071526Biological Processsemaphorin-plexin signaling pathwayInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0070042Molecular FunctionrRNA (uridine-N3-)-methyltransferase activityInterproscan
GO:0070475Biological ProcessrRNA base methylationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0008242Molecular Functionomega peptidase activityInterproscan
GO:0005773Cellular ComponentvacuoleInterproscan
GO:0034722Molecular Functiongamma-glutamyl-peptidase activityInterproscan
GO:0046900Biological Processtetrahydrofolylpolyglutamate metabolic processInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13203ZFR; zinc finger RNA-binding protein-Peptidases and inhibitorsko01002deepkoala
Messenger RNA biogenesisko03019deepkoala
Spliceosomeko03041deepkoala

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