Gene detail

Detailed information of g6522.t1 in Tripedalia maipoensis

Genomic Location: scaffold_3:17081591...17119503
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6522.t1

ATGGCGGCAGTTACAGCTGCAGGGAGCAGCAGAACCCAAGGCAATAGCCGATCATGGCTTGCAAGAATCCAGGAATCGTTATGGCAGTCAAATAGGTTAGTGATTGACCGAAAAGCCATTGAAAAATGCTGGCGGTTAATGGACAAAGTAGGGAAGTACTGCCAACATCAGCGACTTAACCTGAAGAATAGCCCACCTTACATTTTGGACATTCTTCCAGAGACTTACAAGCATTTAAAGCTTGTTGTTAGAAATTATGAGGAGAGGATGCACGTTTTGAATGACTGTGAGTACTTTAGAACGTACTTGGAAAATCTCAGTAAGAAATGTAAGCAAGTGATTAAATTATTTAAAGAAGGCAAGGACAAAATGTTCGAGGAGTATTCGATATATCGGAGGAACTTAACAAAACTCAGTTTGTTTTTCTCCCACATGCTCGCTGATCTTAAAGCCATATTTCCTAATGGTGCTTACATTGGCACGGGCTTTAAGATAACGAAACAGGATGCGGCTGACTTCTGGAAGCGTATGTTTGGGGAAAGAACTGTTGTGGCATGGAAAACATTTAGGGAATCTCTTCACACGGTTCACCCAGTACGATTTGGCTTGGAAGCAATAGCGTTGAAAAGGACAATTGACTTGACAGGAAATAATTATGTCTCAATATTTGAGTTTGATGTCTTTACAAGGCTGTTTGCACCATGGAGCAATATTATTCAAAACTGGAGTTTGTTGGCTGTTACTCATCCAGGATATAAAGCCTTTCTTACTTATGATGACGTGAAGGAGAAGCTAATGCACTTTATTGACAAACCTGGAAGTTACATATTTCGTTTGAGTTGTACACATTTGGGGCAATGGGCCATTGGCTATGTGACAAGCGAGCAAACAATCCTTCAAACTATTCCACAGAACAAGACTTTGATGCAGGCCTTAGTGGATGGTGAACGAGAAGGATTCTATCTGTTTCCCAACGGCGAGGAAGAGAACCCTAATCTGCAGCCGTACCTTCTGCCAAAACAAGAGCAGCACATTCAAGTCACGGAGGAGCAGTATGAGTTATATGTTGAGATGGGTTCTACTTTCCAACTGTGTAAAATATGTGCTGAAAATGATAAGGATGTGAAAATTGAACCCTGTGGTCATTTGATGTGCAAAAGTTGTCTAGTCCACTGGCAAGATAGCGGAGGAGAAGGCTGTCCGTTCTGTCGTTCCGAAATCAAAGGAATCGAGTCTGTTGTCATCGAACCATACACCGGGAGGTTTAAAGAGCGAGACATTTCTCACGCTCAGAAGCCTGTTTCGCCAGATACTGATGAGGAACTTGAGGACGTCCTATCCGTTTGTACTCTGCAAAAACCGGAAGACACGGAGATGGAACGAACTAGTGCCGATGGTGCTGAAATCAGTATGCTTAGCCCTCCAGATACGCCCACGATGTTAGTTAGTGAGGCACCACCCTTACCAGATAGAAAACCGTCAGCCTCAGGTACCGCAGGGTTTCCAGTTCCTTTCAGGTTTCCTACTTCTTCTGACCCTTTTACACAGCGAATATCTCCATTTAACTCACCAAGGGCATCCCCCTCCACATCACCGTGGGCGTCCCCGAGAACATCACCTTTTGCTTCGCCCAAAACATCACCAGTGGGCTCTCCTCAGGGTACGAAAAGGCTACCCCCACCCCCGCCTACCGATTGTTTGAATCCTGATGTACCTCCCGTGTTGCCTCCAAAGCCTCGCGGTGGGCACGGTCCTAATGTTTCAAACCACCTGAGTTTGAAAAGATCTGTTTCTCCTGCTCGTCGTGTTCGAAGCTTTCCCCGTTCCGAGTTAGCGAGCAACTATAATCGACTAAATCTTGATGATGGTTTTAGTCCCCTTGACGGTCATAGAAGTCAAAGTGAGAGCGACCTTCTCACTCAAAAGGAGGGCGAACCCAGCAATACAATAGCCATGGGATATCGAGCCGTTTCCGATGAAAGTGTCTTGGACACGACTAGCGATAACAAAGTACGAGCGCCGTCAGTTCACAGAGAACTCAAGCCCAGTTTTGATAATAGGAAAGCATCACCGGTTCCTATTAGTGAATCTAACCAGACAACGCATTCAGGGGACGCAGTTTCGTCCAAGGAGCCAACGTCACCCTCGCAATATAAAGTTTTACCGAACCGTAGTTCCTCTTTTGGTAACGCTGCCTTTGCTCCAATTGTGAATCCTTCCGCTGAGTACAAAGTGCTTGGGAAATCTGGTCCTCCACAGGCAGCCACTTCTTCAGGGAGCGAGGCTTCTTCTGAGAATGACAAAAGGAAATCGTTGCCAAGGGCATACTATGAGACTGTGTTTCCAAATGACGATGGTACTGCTGCTGATCAGGACCAAAACTCGGACCAGGAAGGAACCGCAAGTGATGTTAATAAGCGAGCTTCCACAACGAGCATTAGCGAAGACGAAGGAGTTGGGATTAAAAGAGAGCGTCTGTCTAGTTTGTCGAAGCGATGCCCTACGGAGCCCAAATTTCACCACCCACCTCGACGGATGAGCTCATTGGATAAGATCAGTACTGACGTTAAAATCGACGTGGCAAATAAACCGTTACCACCGATACCACAACCTCCTTGTAACATGTCAGTCGTAGACGGACTTGCACCGATTACGAACGACGAAGCGTATGAAGTACCGAAGCCAGAACTCCCACTAAAGCGAAAGCAGAATCGAAAACAAGTGACCAGTGATTCTACTTCGCCTCGTGTGGTCACGTTCGATGATCCAATGGAATCTTACAAGGTTCTAAGTGGGCAGGGACGAGCACCGGCAGTTACGAATGAATTCCGAAAGGCTGGGGCAGACAAAAACACCCCATCGGTCTCCTCCAGCGATACTGTGTACTATCCCATTCCGGAAGATATTCCACCCGTCACTGACATACGAGCAGAGCGTGCTGAATTTCTGGCCAACAAGAACAAAGAAGTGTATGACTTCCCTGTCCCTGTCTTGCAAAGTGGTGTGAATACCTCACCGGGAGCGCAAAACCAATCCAGCAGTAGTGTCAAGTCAGTTTTCAGTGCATCGTCTGGAGATCCCTTTCAAGACGACGACTTTTTTCAGCCCACAAGGGGAGGGTCTGACTTCGAGGGCAAGGGAGCATTGGTTGTGGATTTAAGCAGTGAGCCGCGTTGTGACGGGGTCTCTAGTAAAGTGCCAGGTGCAATACCCGGGACACAAAAGTCCAAAGGATCCCCCAGTAGGGGAGCGGTTTCTGCGTCATCAGGCCAACAAGCAAGAGGTAACGACCATGCAAAACCTAGAGCTGGGAGATTCTATGATGGTGATCAGTCTACCCATTCCAAAGAGCCCATTAAATTTTTTGAAGAAGACTTTCAAATTTTTATGTCTCAGGGTTACACTCGGGATGAAATCAAGAAAGCGCTTGTTGTGGCCGAGAATAATTTTGTTTTGGCGCGTAAAATTCTGCAGGAATACGCACATCCGTCAAAATGA

Transcript

g6522.t1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005763 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02262 all species →	Cbl_N	CBL proto-oncogene N-terminal domain 1	Domain	Interproscan
PF02762 all species →	Cbl_N3	CBL proto-oncogene N-terminus, SH2-like domain	Domain	Interproscan
PF02761 all species →	Cbl_N2	CBL proto-oncogene N-terminus, EF hand-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR003153 all species →	Domain	Adaptor protein Cbl, N-terminal helical	Interproscan
IPR014742 all species →	Domain	Adaptor protein Cbl, SH2-like domain	Interproscan
IPR014741 all species →	Domain	Adaptor protein Cbl, EF hand-like	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR024159 all species →	Domain	Adaptor protein Cbl, PTB domain	Interproscan
IPR024162 all species →	Family	Adaptor protein Cbl	Interproscan
IPR036537 all species →	Homologous_superfamily	Adaptor protein Cbl, N-terminal domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23007 all species →	CBL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0001784 all species →	Molecular Function	phosphotyrosine residue binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007175 all species →	Biological Process	negative regulation of epidermal growth factor-activated receptor activity	Interproscan
GO:0017124 all species →	Molecular Function	SH3 domain binding	Interproscan
GO:0023051 all species →	Biological Process	regulation of signaling	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0045121 all species →	Cellular Component	membrane raft	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04707	CBL; E3 ubiquitin-protein ligase CBL	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.