Gene detail

Detailed information of g6548.t2 in Tripedalia maipoensis

Genomic Location: scaffold_3:18177822...18246774
NR annotation: no NCBI-NR hit recorded
Species abbreviation TMAIP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6548.t2

ATGTCCCTCAAGACATTCCCGGTCTGGGTAGGTTCCCTGTCAGTTATTACTGATGAAAAGAAGTTGCGACGAGAGTTTGAAAGGTTTGGTCCCATAAACAGTGTTGCTCTGCAACGGGAGAAGTCTACTGGGGTTTCTCGCCAATTTGCCTTTGTCAACTTTCATAACAAGGAAGTCGGTGATACTGCTGCCAGGGAAATGAATGGCAATTTTATTGATGGTTCGCGAATTAAAGCAAAAGGACCCACGCAGTTAGAGGGAGAGTCGAAGTTGGGAAAGAAACAACAGAGGGAGAAGATAGACTTCAGGCCGCTTACTGACTGCTCGTACTTCATAGCTGGTGAGCAATGCAATCCCAAGAATGGTGGGATTTGCCCATATCGTCATCTGAATATTGCCAAACTAAATACTAAAGATTGCCCGCGCTGGAAGGAAAAGACCTGCAGGAATATCCAATGTAATTTTAGGCACCCAGGTGGCAAAGTACATCGATGTAGTTCCCATAATATGGTCCAATGTCAAGGTGAATGTGGGACCAAGGATTGCAACCTCCATTTTGATGATACTGCATCTTTCAAGAAACATGCTGCAAATAAAGGGAAATACACTTCTCTCAACACAGGGCCCTCATCAGCTTGTTCTGAGTGTGGAGCTGTTTTCTTTAGTGAAAAGGAGAAAAATGTTCACGTGAAGAAAAGTCACAAGGACACCAAAGAGATTGCGAGTTCATCTCAAGACACAGGTGATTTGGAGCCCGTTGGCGTCTTTTGGGATATTGAAAATTGCCCCGTCCCATCTGGGAAGTCAGCATTGGCCATTGTGAATCGTATAAGGAAACAATTTTATAATGGCCGCAAGGAAGCAGAGTTCAAGTGCGTCTGTGATACTTCTAAAGAAAAGAAAGAAGTCATAGACGCTCTGAACAAAGCACATGTTGATGTTCTCCATGTCAGTGCCACTGCTAAAAACGCAGCGGATGACAAACTCAAACAGGCTCTTAGAAGATTTGCTTTGGAGCATCAACCACCAGCGACCGTCATTTTGATCTCCGGTGATATTAATTTCAGCCCAGACTTGTCCGACCTCATGCATCGGAATAAGTTTACGGTGATACTAATACACAACGCACAGGCATCTGATGCCCTCAAAGAATGTGCGGATCAGCTGGAACGGTTTGAAATACTGAGTGCTAATTTGCCACTTCAGAAGCAGTTAGGTGGCACTCAGGTTTTCAAAGAAGTACTCATCGGGAATTTGCCCCGTCACATGAACGATGGTAGTATCAAATCCAAATTGTCCTTGCTGGGAAGCAATTGCGGAGGAAAAGTTACAGATGTTCGACTGGCCAGTAGTGGACTGTTTAAGGAAGCCATCGTGCAATTTCCCGACTCTGAAGCTGCAAAAAAGGCCAAGAAGAGACTGGAAAAGGAAATCATTGAAGGGTTACCAATTTCCACGGAACTACTCCTTCGAGGACCAAAGACTAATAAAGAGGGTCAAGGCGCCAAAGACTTCCCTGCTGCTGCTGTAAGGGATAAGGAGCCAAAAAAGGCCACACCTAAAAAGCAGGCTGTTGTACATCCAAAGACTGTCAAGCCAAACGTATCTGCTACGTCTGCGAAGACAACTTTGAGTATAAGACCTGCTATCCCTGCCAACGTGGTGAGGCAGAGTGCAAACGATCGACCCATGCCATATGCTTCAAACTTTTGTCCCTTTCCACCCCCCTCGAATGTTGAACTTTTAAATAATATTGATCTTGTAGTCAAGAACTTCCCAGAGACTTTGTCAGAAAAGGAACTAAAAGGAAAGCTCGAATCTTTATTTAGGGAACAATGCAAGGTCAACTCTGTGACTATAATTCGTCAAGAAAAAGGAACCCCTTACGCTTACATTCGAGTACCAAGGTTAGCAGATGCACAACTGTGCGTCAGCAAAATCAACGGGAAAGAACTTCTAGGGCAGAGGTTAAGCGTCACCTTGGCGAACGAGGAATCTCTTATTAAACTTAAAAGAGAGGTTGCTAACATTCTGCTTCAAACCAATTCTGGTTGGTTGCCCTTGGACAATTTTGTTGAGTGTTACCGTTCTCGCAATTCAAGTCCTCTCAATATGCATAAACTTGATCTTCTCAAAGAGTTGATTTACATTGATGGAAAACCAGGGAGGCAGTTTATATGCCTGTTATGCTTTGAGGTTGGGAAATTGAAGGTAAAGGACGAGACTGGTAAACTGAGTGAAATTCTTGGAAGGACAGTTATGGAGCATGACAGAAAAATGCCGGCTGCTAGCCTACCAGGCTTGTACTGGAGCTATACTAACGGATTCTTGCCTCTAGCTGACAATGGTGTGCCCCTCCTAAATATCGCCTGCCGTAGTCCATTGATCGAATGGATTCAAGGACCACCACAAAGGCAGGCGATTTTCTTCAAGAAATCCAATACACACAGAGGCCTTCAAACTCGAAAAGAAACGCTCAAATCGGAGATAGTGAAGTTGTTGGAAGCCTCACCAGGATACAAGGTCCTTTTCAGTCAGTTTTTCATTGCCTTTTACGAATTTTACGGGCGGAAATTCACCACTGATTATGGACCGACTACATTAGATGTTCTGGATAGTATCAAACACATTGTTGAGGTTGATGGAAAAGACGACACAAAGGTCGTGTCCTTAAGGGAGTCCTACCGGAAGTACCTCTTAAACACCAAAATGGAGGAAATGCTGAGAAGCCGGGGCACTCTCCCTTTTCACAAGATCCTCCCGTGCTTCTATCAGTTTTATGGAAGAAAGCTGGTTCCCAAGAATTACGGATTTGCTAATCTTCCTGCCCTTGTGAGAGGCCTACCTGGCCAATTCAAGAAAAAAGGAAAAGAAGGGAAACAAGTACTGGTTCTTGGAAAGACAAAAACAGGCCAGAAAAATGTTTCAAAGGCACGCAAGACAGAACAAGAGATTTTTGGGCTGATTCAGTCATCAGGGACGACTTTCATTGATTTGACGAGGTTGTTTGAGGAATATTATAGGCACTATGGGCGGCAAATGGATCTTCCCTCACTGGACGATGACTCTTTGAGAAAATATCTTAATTCGTGTAAGACACTCCAGGTTACAGACGTCGATGGCACCACCACGGTCAAAGCACGGGTTCCAAGGGCCAAACGACACATGCAACTCGAAAAAGACGTCATCTCAGCTCTTGAATGCGGTGATCAGCCTTTTGTTACTGTCGAAAATTTCCTCACTCTGCTGCACGAGAAGACTGGGAACAATGCTCTCACCCTCACGGAACTGGCTGATGTGATTGAACCGTTCGCTGTGGTGTTGGGCTTCGAGTCTGCACAGTTGTTGATGAAGAAACAAGCGCTGACCCAAGTGAACGAGGATTACTTGGTACGTTCTCTCGCCATCAAACACCTGCTTACGTGCAAAGAGCTAACAGCTCCCTACGCAGATGTATTTGAAGTCGTTAAGGACGAAGCCGAAAGGGTTGGTGCAACCGTTACGGACGATCTTTTCATGGGAGTTGTTCAGCAACGTGGCGGTCAATGGTTTAAGGTCTCAACGAAGCCGACCGCAAGCTTGCAAGTCAAACCTACCGCGGCTATTCAATGGCTTGCATTCCATCTCTCATCCGTATTGGAACCTAACGTAATGCTAGGACCCTCAAGCTTACTGGAATTACTTGGCGACGTGGTAGGTGTGGCTATCAATCCTGATCACTTTGGGTTCAAGAGTGTGGAGGAGATGGTGGGTGCTTTTCCTCCCAATTGGATTCAGCTTACGGAACAGAATGGAATCAAGGCAGTGACAACCATGATGATGATACAGGTAGAGAAGGAAATATCATCGCTTCTTCAAGAGCTCGGAGGCTACTGTTACCTGTGCCAGTTTGCACCTTTGTATCAAAAGAAATACAATAAGGAGTGCAAAGCGGGGAATTATGGCTTTGGAAAAATGACTCAGCTGATGCAGCATATCCCTGAATCGGTGTTGTTGGTTGGATCGGGAGTTCGTGTTACGGTTGTTCTAAAAAAGCTAGTAATCCTTCTATCCACTTCAAGAGCTGGGCAGCTGGAGAGCGTGGGGAGTGATAGTGGAACAGATAAAGCAGACACGGCAAGTGTGTTGTCTGACGAAGACGATGTGATCGTTGAAGAAGAATCTGAATGGTCATCCATCAATGATCTAGTCGCTGCCGGCGCAGAGGGCGACCTACTAAGCTTTAGTGACAACGAGGGTTCAGTGGAGGATTGGTGGATGTCACCTGTGCCTGAAAGTTTGCCAGAACCAGTGTTCGGCGTGGACAGCGGTGCCTCAGGTGTCGATTTGATGTCCTTTATAAGTTTTAGTGGTAAAGACATAGAGTCGGCGGGATTGCCCACTTCAAGCCAGCTTGCGAATTCTGACAATATTGAAAGCGATATTCTGAGTTTCGATCCTGTAATTAGCAAACAAGATCATGAAGTTATTGTATCAGGGGAAGCTTTGGAGAGTCAGAATCCCATGGACCAGATTCAGGATTTGATACCTCTAATGCATCACGATGTCAGTCAGTTTCCTTTACCAGATGATGACTTTGACGATGAAGAAGACGAAGTCATCTCGAAGCCAGACTCACAGGAAACTGTATCTGAGGATGATACGGAAGAAGATGTGTCAAAAGAGGCCTGCGATGAGAGGAAGAGAGACGAGCTGCTTCATGGCGACTTTTCTGGATTGATTTCTATGCTGAAGATGGATGTTAAAGTTCCTCGCATAGCAGCTTTGTTTCCTAGTCAAGAAAAGAAAGTGGAAGAGTAA

Transcript

g6548.t2

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01936 all species →	NYN	NYN domain	Domain	Interproscan
PF12872 all species →	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025605 all species →	Domain	OST-HTH/LOTUS domain	Interproscan
IPR021139 all species →	Domain	NYN domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR041966 all species →	Homologous_superfamily	LOTUS-like domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR024768 all species →	Family	Meiosis regulator and mRNA stability factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14379 all species →	LIMKAIN B LKAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:1905762 all species →	Molecular Function	CCR4-NOT complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g6548.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.