Gene detail

Detailed information of g656.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH1274387.1, C16orf62, partial [Branchiostoma lanceolatum]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BWQ6	VPS35 endosomal protein-sorting factor-like OS=Mus musculus OX=10090 GN=Vps35l PE=1 SV=2
Q5XI83	VPS35 endosomal protein-sorting factor-like OS=Rattus norvegicus OX=10116 GN=Vps35l PE=2 SV=1
Q7Z3J2	VPS35 endosomal protein-sorting factor-like OS=Homo sapiens OX=9606 GN=VPS35L PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)
Orthogroup (gene family)	OG0000056 (this species only)
Orthogroup (gene family)	OG0000114 (this species only)
Orthogroup (gene family)	OG0002348 (this species only)
Orthogroup (gene family)	OG0003544 (this species only)
Orthogroup (gene family)	OG0003748 (this species only)
Orthogroup (gene family)	OG0004054 (this species only)
Orthogroup (gene family)	OG0004465 (this species only)
Orthogroup (gene family)	OG0005480 (this species only)
Orthogroup (gene family)	OG0007910 (this species only)
Orthogroup (gene family)	OG0008947 (this species only)
Orthogroup (gene family)	OG0009194 (this species only)
Orthogroup (gene family)	OG0012386 (this species only)
Orthogroup (gene family)	OG0025850 (this species only)
Orthogroup (gene family)	OG0174444 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19295 all species →	SufBD_N	SufBD protein N-terminal region	Family	Interproscan
PF01458 all species →	SUFBD	SUF system FeS cluster assembly, SufBD	Family	Interproscan
PF08284 all species →	RVP_2	Retroviral aspartyl protease	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF01761 all species →	DHQ_synthase	3-dehydroquinate synthase	Domain	Interproscan
PF00772 all species →	DnaB	DnaB-like helicase N terminal domain	Domain	Interproscan
PF01281 all species →	Ribosomal_L9_N	Ribosomal protein L9, N-terminal domain	Domain	Interproscan
PF03796 all species →	DnaB_C	DnaB-like helicase C terminal domain	Domain	Interproscan
PF03948 all species →	Ribosomal_L9_C	Ribosomal protein L9, C-terminal domain	Domain	Interproscan
PF01687 all species →	Flavokinase	Riboflavin kinase	Domain	Interproscan
PF14923 all species →	CCDC142	Coiled-coil protein 142	Coiled-coil	Interproscan
PF00326 all species →	Peptidase_S9	Prolyl oligopeptidase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037284 all species →	Homologous_superfamily	SUF system FeS cluster assembly, SufBD superfamily	Interproscan
IPR045595 all species →	Domain	SUF system FeS cluster assembly, SufBD, N-terminal	Interproscan
IPR010231 all species →	Family	SUF system FeS cluster assembly, SufB	Interproscan
IPR000825 all species →	Family	SUF system FeS cluster assembly, SufBD	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR051320 all species →	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR006627 all species →	Repeat	TDU repeat	Interproscan
IPR030963 all species →	Family	3-dehydroquinate synthase family	Interproscan
IPR030960 all species →	Domain	3-dehydroquinate synthase domain	Interproscan
IPR016037 all species →	Domain	3-dehydroquinate synthase AroB	Interproscan
IPR050071 all species →	Family	Dehydroquinate Synthase	Interproscan
IPR029705 all species →	Family	VPS35 endosomal protein sorting factor-like	Interproscan
IPR007693 all species →	Domain	DNA helicase, DnaB-like, N-terminal	Interproscan
IPR020070 all species →	Domain	Large ribosomal subunit protein bL9, N-terminal	Interproscan
IPR007694 all species →	Domain	DNA helicase, DnaB-like, C-terminal	Interproscan
IPR016136 all species →	Homologous_superfamily	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020594 all species →	Family	Large ribosomal subunit protein bL9, bacteria/chloroplast	Interproscan
IPR009027 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Interproscan
IPR007692 all species →	Family	DNA helicase, DnaB type	Interproscan
IPR036791 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, C-terminal domain superfamily	Interproscan
IPR036185 all species →	Homologous_superfamily	DNA helicase, DnaB-like, N-terminal domain superfamily	Interproscan
IPR020069 all species →	Domain	Large ribosomal subunit protein bL9, C-terminal	Interproscan
IPR036935 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Interproscan
IPR023465 all species →	Homologous_superfamily	Riboflavin kinase domain superfamily	Interproscan
IPR015865 all species →	Domain	Riboflavin kinase domain, bacterial/eukaryotic	Interproscan
IPR023468 all species →	Family	Riboflavin kinase	Interproscan
IPR026700 all species →	Family	Coiled-coil domain-containing protein 142	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR001375 all species →	Domain	Peptidase S9, prolyl oligopeptidase, catalytic domain	Interproscan
IPR051543 all species →	Family	Serine Peptidase S9A Subfamily	Interproscan
IPR051580 all species →	Family	Zinc finger and chromatin remodeling-associated protein	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30508 all species →	FES CLUSTER ASSEMBLY PROTEIN SUF	Interproscan
PTHR33064 all species →	POL PROTEIN	Interproscan
PTHR14149 all species →	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan
PTHR43622 all species →	3-DEHYDROQUINATE SYNTHASE	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13673 all species →	ESOPHAGEAL CANCER ASSOCIATED PROTEIN	Interproscan
PTHR30153 all species →	REPLICATIVE DNA HELICASE DNAB	Interproscan
PTHR22749 all species →	RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE	Interproscan
PTHR21436 all species →	UNCHARACTERIZED	Interproscan
PTHR11757 all species →	PROTEASE FAMILY S9A OLIGOPEPTIDASE	Interproscan
PTHR23057 all species →	JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:1903479 all species →	Biological Process	mitotic actomyosin contractile ring assembly actin filament organization	Interproscan
GO:0009073 all species →	Biological Process	aromatic amino acid family biosynthetic process	Interproscan
GO:0016838 all species →	Molecular Function	carbon-oxygen lyase activity, acting on phosphates	Interproscan
GO:0003856 all species →	Molecular Function	3-dehydroquinate synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008531 all species →	Molecular Function	riboflavin kinase activity	Interproscan
GO:0009231 all species →	Biological Process	riboflavin biosynthetic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006771 all species →	Biological Process	riboflavin metabolic process	Interproscan
GO:0009398 all species →	Biological Process	FMN biosynthetic process	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00861	RFK, FMN1; riboflavin kinase	EC:2.7.1.26	Riboflavin metabolism	ko00740	deepkoala
K01735	aroB; 3-dehydroquinate synthase	EC:4.2.3.4	Phenylalanine, tyrosine and tryptophan biosynthesis	ko00400	deepkoala
K02314	dnaB; replicative DNA helicase	EC:5.6.2.3	DNA replication proteins	ko03032	deepkoala
K09014	sufB; Fe-S cluster assembly protein SufB	-	General function prediction only	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.