Detailed information of g656.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH1274387.1, C16orf62, partial [Branchiostoma lanceolatum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8BWQ6VPS35 endosomal protein-sorting factor-like OS=Mus musculus OX=10090 GN=Vps35l PE=1 SV=2
Q5XI83VPS35 endosomal protein-sorting factor-like OS=Rattus norvegicus OX=10116 GN=Vps35l PE=2 SV=1
Q7Z3J2VPS35 endosomal protein-sorting factor-like OS=Homo sapiens OX=9606 GN=VPS35L PE=1 SV=2
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19295SufBD_NSufBD protein N-terminal regionFamilyInterproscan
PF01458SUFBDSUF system FeS cluster assembly, SufBDFamilyInterproscan
PF08284RVP_2Retroviral aspartyl proteaseDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00612IQIQ calmodulin-binding motifMotifInterproscan
PF13516LRR_6Leucine Rich repeatRepeatInterproscan
PF00307CHCalponin homology (CH) domainDomainInterproscan
PF01761DHQ_synthase3-dehydroquinate synthaseDomainInterproscan
PF00772DnaBDnaB-like helicase N terminal domainDomainInterproscan
PF01281Ribosomal_L9_NRibosomal protein L9, N-terminal domainDomainInterproscan
PF03796DnaB_CDnaB-like helicase C terminal domainDomainInterproscan
PF03948Ribosomal_L9_CRibosomal protein L9, C-terminal domainDomainInterproscan
PF01687FlavokinaseRiboflavin kinaseDomainInterproscan
PF14923CCDC142Coiled-coil protein 142Coiled-coilInterproscan
PF00326Peptidase_S9Prolyl oligopeptidase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037284Homologous_superfamilySUF system FeS cluster assembly, SufBD superfamilyInterproscan
IPR045595DomainSUF system FeS cluster assembly, SufBD, N-terminalInterproscan
IPR010231FamilySUF system FeS cluster assembly, SufBInterproscan
IPR000825FamilySUF system FeS cluster assembly, SufBDInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR051320FamilyViral Replication and Maturation PolyproteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR001969Active_siteAspartic peptidase, active siteInterproscan
IPR000048Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR001202DomainWW domainInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR036020Homologous_superfamilyWW domain superfamilyInterproscan
IPR006627RepeatTDU repeatInterproscan
IPR030963Family3-dehydroquinate synthase familyInterproscan
IPR030960Domain3-dehydroquinate synthase domainInterproscan
IPR016037Domain3-dehydroquinate synthase AroBInterproscan
IPR050071FamilyDehydroquinate SynthaseInterproscan
IPR029705FamilyVPS35 endosomal protein sorting factor-likeInterproscan
IPR007693DomainDNA helicase, DnaB-like, N-terminalInterproscan
IPR020070DomainLarge ribosomal subunit protein bL9, N-terminalInterproscan
IPR007694DomainDNA helicase, DnaB-like, C-terminalInterproscan
IPR016136Homologous_superfamilyDNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR020594FamilyLarge ribosomal subunit protein bL9, bacteria/chloroplastInterproscan
IPR009027Homologous_superfamilyLarge ribosomal subunit protein bL9/RNase H1, N-terminalInterproscan
IPR007692FamilyDNA helicase, DnaB typeInterproscan
IPR036791Homologous_superfamilyLarge ribosomal subunit protein bL9, C-terminal domain superfamilyInterproscan
IPR036185Homologous_superfamilyDNA helicase, DnaB-like, N-terminal domain superfamilyInterproscan
IPR020069DomainLarge ribosomal subunit protein bL9, C-terminalInterproscan
IPR036935Homologous_superfamilyLarge ribosomal subunit protein bL9, N-terminal domain superfamilyInterproscan
IPR023465Homologous_superfamilyRiboflavin kinase domain superfamilyInterproscan
IPR015865DomainRiboflavin kinase domain, bacterial/eukaryoticInterproscan
IPR023468FamilyRiboflavin kinaseInterproscan
IPR026700FamilyCoiled-coil domain-containing protein 142Interproscan
IPR029058Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR001375DomainPeptidase S9, prolyl oligopeptidase, catalytic domainInterproscan
IPR051543FamilySerine Peptidase S9A SubfamilyInterproscan
IPR051580FamilyZinc finger and chromatin remodeling-associated proteinInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30508FES CLUSTER ASSEMBLY PROTEIN SUFInterproscan
PTHR33064POL PROTEINInterproscan
PTHR14149RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIFInterproscan
PTHR436223-DEHYDROQUINATE SYNTHASEInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR13673ESOPHAGEAL CANCER ASSOCIATED PROTEINInterproscan
PTHR30153REPLICATIVE DNA HELICASE DNABInterproscan
PTHR22749RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASEInterproscan
PTHR21436UNCHARACTERIZEDInterproscan
PTHR11757PROTEASE FAMILY S9A OLIGOPEPTIDASEInterproscan
PTHR23057JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016226Biological Processiron-sulfur cluster assemblyInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0005516Molecular Functioncalmodulin bindingInterproscan
GO:0005938Cellular Componentcell cortexInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:1903479Biological Processmitotic actomyosin contractile ring assembly actin filament organizationInterproscan
GO:0009073Biological Processaromatic amino acid family biosynthetic processInterproscan
GO:0016838Molecular Functioncarbon-oxygen lyase activity, acting on phosphatesInterproscan
GO:0003856Molecular Function3-dehydroquinate synthase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0032456Biological Processendocytic recyclingInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006268Biological ProcessDNA unwinding involved in DNA replicationInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0008531Molecular Functionriboflavin kinase activityInterproscan
GO:0009231Biological Processriboflavin biosynthetic processInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006771Biological Processriboflavin metabolic processInterproscan
GO:0009398Biological ProcessFMN biosynthetic processInterproscan
GO:0008236Molecular Functionserine-type peptidase activityInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02314dnaB; replicative DNA helicaseEC:5.6.2.3
Riboflavin metabolismko00740deepkoala
Phenylalanine, tyrosine and tryptophan biosynthesisko00400deepkoala
General function prediction only-deepkoala
DNA replication proteinsko03032deepkoala

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