Gene detail

Detailed information of g657.t1 in Montipora capitata

Genomic Location: Sc0000006:949192...969076
NR annotation: XP_029211270.2, ankyrin repeat and IBR domain-containing protein 1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g657.t1

atggttttctctgaaagtccaggtggcattactgttgatatcgatgagccagtttttgttgacaaagatgacacgaaacagtacagaggtctctgtgctcaggatctgcaagaagcaaaagatttgatgttggtagaaactgctgacatgctcatggtcccattatttactgctgagggtctattacgaaatcatgagtggtcaaaggaagcactgatagatgcttggatgaaagatcctgtggctgcttgtgagaaggctggggtcaccctgtcggagaatcatgtgactggtaatgcagaacttgaagagaagacaaaactcccaatcaaaagcaactttagaaattcagaagtctgctctatttgtgaagaggaaatagtgtatgaggatgttccattatccctttcttgcgggcatgaattctgtcgttcctgttgggaaagttatctgaatgtaaaaataaaagaaggcaaggcacatgatattcaatgtccagcatttgactgcagttcattggtacctgtggaaactattgaaagtcttgtttcaagagaaatggcaagaaaataccttcagtttgacattaaggcttttgtagagagtaatccaaatcttaaatggtgtccttccccgggatgtggccaagctgtgaggttaccatcaagcacagtcctcccagcatcagtagctgtggatgcaagctcatcagaggaaacagaagcactgatagtagattgcggcaagggtcatttcttctgctggtattgtttgcacgaagcccatgcaccttgtagctgtgaactgtggaatcagtggctgaagaaaattgcagagatgatgccaaagataccactgacagcagatatttcagagtgcccagaaacagagactgtggcaaacactctttggctggtgacaaattcaaaagcctgccccaactgcaaatctcccattcagaagaatgaaggatgtaatcatatgaaatgcacaaagtgtaagtatgagttttgctgggtttgtttagaacaatggaaaaaacacagttcagccactggcggatattttaggtgtaatcgatttgaggtagtacaaaaagtggagtcagattctgctaagctggtgacagagtttgaagaacctttactcagtacagcaaaaaacaaaatgactacattagctcttgctgctatggaaacagcttccacatcagttgaaaatgccgacacatcattcattgaggatgcagtacataaattgttgagcgcaagaagagtcctgcgatcttcttatccctatggcttttatcttactggcaacaaggagaagaaagcaatctttgaatccatgcagacagaggtagaggaagctacagagattctgtcccagatggtggctcggccttacctacgaacgccgcgtgcaaggattatgcaagccactcagctgctctataggaaacaacaagacttcctgttggctttgtctcggggagtgattcctgatgaaattgaccagatgccagaacagagcagctatggccccaggttaaatcttttttcacctttgggtgtcattcaagacagtgagtctgatgaggatgaagacaactacgatgaagtgcatcagtctgttaaacagtcgtttttgagcagcagactctcgcagcttgcaaggatggaattggctggacactttccacaaagtgaagtggcagtagatgaggagcaagcatctggcatcagagagacactcaactgtgatgctatacacaaaaagtcaaatttgtcttcttgccacttgtacaagcaaggaaatggtgcagaaaagaaagaagacaggatgaaaagacgagggaagaaaagccatcaagttgaagttgacgaagaggctgacattgattttatgagagccattgagctgtccttattacagcacagcacaccaactaatcagcgttgctatcgttcatcttcatccagcagctcagctggctcagggcgagatcaggcacagggaggggagggtcagcaagatctgtcagtcttgtctgacagtacctctcttcagaaagctattgagttgtcacttcaagcttctgctgtggcagatgtttccgtatcacctgatgttgctaatgataatgatgacgatttaaagagagccatcagactatcactgctggacagtggtctttctccaaagggaaatgatgacagtgcaaacacaggaagtttttcgcgaagccgaacagattatcaagacagcgatagcagtagtgaatatgatgttcatttttag

Transcript

g657.t1

ATGGTTTTCTCTGAAAGTCCAGGTGGCATTACTGTTGATATCGATGAGCCAGTTTTTGTTGACAAAGATGACACGAAACAGTACAGAGGTCTCTGTGCTCAGGATCTGCAAGAAGCAAAAGATTTGATGTTGGTAGAAACTGCTGACATGCTCATGGTCCCATTATTTACTGCTGAGGGTCTATTACGAAATCATGAGTGGTCAAAGGAAGCACTGATAGATGCTTGGATGAAAGATCCTGTGGCTGCTTGTGAGAAGGCTGGGGTCACCCTGTCGGAGAATCATGTGACTGGTAATGCAGAACTTGAAGAGAAGACAAAACTCCCAATCAAAAGCAACTTTAGAAATTCAGAAGTCTGCTCTATTTGTGAAGAGGAAATAGTGTATGAGGATGTTCCATTATCCCTTTCTTGCGGGCATGAATTCTGTCGTTCCTGTTGGGAAAGTTATCTGaatgtaaaaataaaagaagGCAAGGCACATGATATTCAATGTCCAGCATTTGACTGCAGTTCATTGGTACCTGTGgaAACTATTGAAAGTCTTGTTTCAAGAGAAATGGCAAGAAAATACCTTCAGTTTGACATTAAGGCTTTTGTAGAGAGTAATCCAAATCTTAAATGGTGTCCTTCCCCGGGATGTGGCCAAGCTGTGAGGTTACCATCAAGCACAGTCCTCCCAGCATCAGTAGCTGTGGATGCAAGCTCATCAGAGGAAACAGAAGCACTGATAGTAGATTGCGGCAAGGGTCATTTCTTCTGCTGGTATTGTTTGCACGAAGCCCATGCACCTTGTAGCTGTGAACTGTGGAATCAGTGGCTGAAGAAAATTGCAGAGATGATGCCAAAGATACCACTGACAGCAGATATTTCAGAGTGCCCAGAAACAGAGACTGTGGCAAACACTCTTTGGCTGGTGACAAATTCAAAAGCCTGCCCCAACTGCAAATCTCCCATTCAGAAGAATGAAGGATGTAATCATATGAAATGCACAAAGTGTAAGTATGAGTTTTGCTGGGTTTGTTTAGAACAATGGAAAAAACACAGTTCAGCCACTGGCGGATATTTTAGGTGTAATCGATTTGAGGTAGTACAAAAAGTGGAGTCAGATTCTGCTAAGCTGGTGACAGAgTTTGAAGAACCTTTACTCAGTAcagcaaaaaacaaaatgacTACATTAGCTCTTGCTGCTATGGAAACAGcTTCCACATCAGTTGAAAATGCCGACACATCATTCATTGAGGATGCAGTACATAAATTGTTGAGCGCAAGAAGAGTCCTGCGATCTTCTTATCCCTATGGCTTTTATCTTACTGGCAACAAGGAGAAGAAAGCAATCTTTGAATCCATGCAGACAGAGGTAGAGGAAGCTACAGAGATTCTGTCCCAGATGGTGGCTCGGCCTTACCTACGAACGCCGCGTGCAAGGATTATGCAAGCCACTCAGCTGCTCTATAGGAAACAACAAGACTTCCTGTTGGCTTTGTCTCGGGGAGTGATTCCTGATGAAATTGACCAGATGCCAGAACAGAGCAGCTATGGCCCCAGGTTAAATCTTTTTTCACCTTTGGGTGTCATTCAAGACAGTGAGTCTGATGAGGATGAAGACAACTACGATGAAGTGCATCAGTCTGTTAAACAGTCGTTTTTGAGCAGCAGACTCTCGCAGCTTGCAAGGATGGAATTGGCTGGACACTTTCCACAAAGTGAAGTGGCAGTAGATGAGGAGCAAGCATCTGGCATCAGAGAGACACTCAACTGTGATGCTATACACAAAAAGTCAAATTTGTCTTCTTGCCACTTGTACAAGCAAGGAAATGGTGcagaaaagaaagaagacaGGATGAAAAGACGAGGGAAGAAAAGCCATCAAGTTGAAGTTGACGAAGAGGCTGACATTGATTTTATGAGAGCCATTGAGCTGTCCTTATTACAGCACAGCACACCAACTAATCAGCGTTGCTATCGTTCATCTTCATCCAGCAGCTCAGCTGGCTCAGGGCGAGATCAGGCACAGGGAGGGGAGGGTCAGCAAGATCTGTCAGTCTTGTCTGACAGTACCTCTCTTCAGAAAGCTATTGAGTTGTCACTTCAAGCTTCTGCTGTGGCAgATGTTTCCGTATCACCTGATGTTgctaatgataatgatgacgatttAAAGAGAGCCATCAGACTATCACTGCTGGACAGTGGTCTTTCTCCAAAGGGAAATGATGACAGTGCAAACACAGGAAGTTTTTCGCGAAGCCGAACAGATTATCAAGACAGCGATAGCAGTAGTGAATATGATGTTCATTTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2G1	Ankyrin repeat and IBR domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKIB1 PE=1 SV=3
Q6ZPS6	Ankyrin repeat and IBR domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ankib1 PE=1 SV=2
Q1L8G6	Ankyrin repeat and IBR domain-containing protein 1 OS=Danio rerio OX=7955 GN=ankib1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005499 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19422 all species →	Ariadne	Ariadne domain	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR045840 all species →	Domain	Ariadne domain	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR047564 all species →	Domain	Ankyrin repeat and IBR domain-containing protein 1, Rcat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11967	ANKIB1; ankyrin repeat and IBR domain-containing protein 1	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g657.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

95.2Max TPM

48.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	45.97	83.42
whole organisms · low pH treatment	15	15	51.21	95.22
whole organisms · extra low pH treatment pH treatment	12	12	47.65	91.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	83.42
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	73.75
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	71.44
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	62.57
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	59.10
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	55.31
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	53.85
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	50.52
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	50.20
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	46.65
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	46.03
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	43.07
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	39.55
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	33.49
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	33.22
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	29.42
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	28.22
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	28.14
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	27.12
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	26.02
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	24.29
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	95.22
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	80.45
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	75.81
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	54.27
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	54.05
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	52.84
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	51.22
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	50.29
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	49.33
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	48.55
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	46.89
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	40.34
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	24.61
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	22.33
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	22.00
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	91.46
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	82.88
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	58.23
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	49.30
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	48.89
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	47.28
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	43.64
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	35.27
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	32.55
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	28.07
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	27.54
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	26.72

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.