Detailed information of g659.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_028514484.1, fas-binding factor 1 isoform X2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
A3QF73Tryptophan synthase beta chain OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=trpB PE=3 SV=1
A1STT0Tryptophan synthase beta chain OS=Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=trpB PE=3 SV=1
Q14FN2Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain FSC 198) OX=393115 GN=trpB PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox
Ubiquitin FamilyUBD|Alpha-Helix|UBAN
Transcription Factors FamilyPou

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01545Cation_effluxCation efflux familyFamilyInterproscan
PF21007FBF1Fas-binding factor 1Coiled-coilInterproscan
PF00385ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan
PF18414zf_C2H2_10C2H2 type zinc-finger DomainInterproscan
PF00291PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan
PF00290Trp_syntATryptophan synthase alpha chainDomainInterproscan
PF00157PouPou domain - N-terminal to homeobox domainDomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027469Homologous_superfamilyCation efflux transmembrane domain superfamilyInterproscan
IPR002524FamilyCation efflux proteinInterproscan
IPR049390DomainFas-binding factor 1, C-terminalInterproscan
IPR033561FamilyFas-binding factor 1Interproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR023779Conserved_siteChromo domain, conserved siteInterproscan
IPR000953DomainChromo/chromo shadow domainInterproscan
IPR023780DomainChromo domainInterproscan
IPR051219FamilyHeterochromatin-associated chromo domain-containing proteinInterproscan
IPR051301FamilyOptineurin/NF-kappa-B Essential ModulatorInterproscan
IPR018204Active_siteTryptophan synthase, alpha chain, active siteInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR023026FamilyTryptophan synthase beta chain/beta chain-likeInterproscan
IPR036052Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR002028FamilyTryptophan synthase, alpha chainInterproscan
IPR011060Homologous_superfamilyRibulose-phosphate binding barrelInterproscan
IPR001926DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR006653Conserved_siteTryptophan synthase, beta chain, conserved siteInterproscan
IPR006654FamilyTryptophan synthase, beta chainInterproscan
IPR001387DomainCro/C1-type helix-turn-helix domainInterproscan
IPR010982Homologous_superfamilyLambda repressor-like, DNA-binding domain superfamilyInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR000327DomainPOU-specific domainInterproscan
IPR013847DomainPOU domainInterproscan
IPR050255FamilyPOU domain transcription factorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45820FI23527P1Interproscan
PTHR33689FAS-BINDING FACTOR 1Interproscan
PTHR22812CHROMOBOX PROTEINInterproscan
PTHR31553NF-KAPPA-B ESSENTIAL MODULATORInterproscan
PTHR48077TRYPTOPHAN SYNTHASE-RELATEDInterproscan
PTHR11636POU DOMAINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005385Molecular Functionzinc ion transmembrane transporter activityInterproscan
GO:0006882Biological Processintracellular zinc ion homeostasisInterproscan
GO:0010312Biological Processdetoxification of zinc ionInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0071577Biological Processzinc ion transmembrane transportInterproscan
GO:0006812Biological Processmonoatomic cation transportInterproscan
GO:0008324Molecular Functionmonoatomic cation transmembrane transporter activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005814Cellular ComponentcentrioleInterproscan
GO:0036064Cellular Componentciliary basal bodyInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0090162Biological Processestablishment of epithelial cell polarityInterproscan
GO:0097539Cellular Componentciliary transition fiberInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005721Cellular Componentpericentric heterochromatinInterproscan
GO:0006325Biological Processchromatin organizationInterproscan
GO:0035064Molecular Functionmethylated histone bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0043122Biological Processregulation of canonical NF-kappaB signal transductionInterproscan
GO:0070530Molecular FunctionK63-linked polyubiquitin modification-dependent protein bindingInterproscan
GO:0004834Molecular Functiontryptophan synthase activityInterproscan
GO:0000162Biological Processtryptophan biosynthetic processInterproscan
GO:0006568Biological Processtryptophan metabolic processInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14688SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1-Transcription factorsko03000deepkoala
Transportersko02000deepkoala

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