Detailed information of g66.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCP4297957.1, hypothetical protein [Pseudomonadota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q17RP2Tigger transposable element-derived protein 6 OS=Homo sapiens OX=9606 GN=TIGD6 PE=1 SV=2
Q9Y4A0Jerky protein homolog-like OS=Homo sapiens OX=9606 GN=JRKL PE=1 SV=2
B2RRL2Jerky protein homolog-like OS=Mus musculus OX=10090 GN=Jrkl PE=2 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01061ABC2_membraneABC-2 type transporterFamilyInterproscan
PF05182Fip1Fip1 motifMotifInterproscan
PF00071RasRas familyDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan
PF00452Bcl-2Apoptosis regulator proteins, Bcl-2 familyFamilyInterproscan
PF00431CUBCUB domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13912zf-C2H2_6C2H2-type zinc fingerDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF21549PRDM2_PRPR domain zinc finger protein 2, PR domainDomainInterproscan
PF03221HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF04218CENP-B_NCENP-B N-terminal DNA-binding domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050352FamilyATP-binding cassette subfamily G transportersInterproscan
IPR013525DomainABC-2 type transporter, transmembrane domainInterproscan
IPR051187FamilyPre-mRNA 3'-end-processing regulatorInterproscan
IPR007854DomainPre-mRNA polyadenylation factor Fip1 domainInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR050227FamilyRas-related protein RabInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR008271Active_siteSerine/threonine-protein kinase, active siteInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR048002DomainCyclin-dependent kinase 20-like, catalytic domainInterproscan
IPR050108FamilyCyclin-dependent kinaseInterproscan
IPR026298FamilyBcl-2 familyInterproscan
IPR002475FamilyBcl2-likeInterproscan
IPR036834Homologous_superfamilyBcl-2-like superfamilyInterproscan
IPR046371DomainBcl-2, Bcl-2 homology region 1-3Interproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000859DomainCUB domainInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR051275FamilyCellular adhesion and signaling domain-containing proteinInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR046341Homologous_superfamilySET domain superfamilyInterproscan
IPR050826FamilyKrueppel C2H2-type Zinc FingerInterproscan
IPR011044Homologous_superfamilyQuinoprotein amine dehydrogenase, beta chain-likeInterproscan
IPR052802FamilyKinetochore-associated RZZ complex proteinInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR007889DomainDNA binding HTH domain, Psq-typeInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48041ABC TRANSPORTER G FAMILY MEMBER 28Interproscan
PTHR13484FIP1-LIKE 1 PROTEINInterproscan
PTHR47977RAS-RELATED PROTEIN RABInterproscan
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan
PTHR24056CELL DIVISION PROTEIN KINASEInterproscan
PTHR11256BCL-2 RELATEDInterproscan
PTHR11640NEPHRINInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR24377IP01015P-RELATEDInterproscan
PTHR15688KINETOCHORE-ASSOCIATED PROTEIN 1Interproscan
PTHR19303TRANSPOSONInterproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0042626Molecular FunctionATPase-coupled transmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0140359Molecular FunctionABC-type transporter activityInterproscan
GO:0005847Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0010008Cellular Componentendosome membraneInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0032456Biological Processendocytic recyclingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0045943Biological Processpositive regulation of transcription by RNA polymerase IInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0005741Cellular Componentmitochondrial outer membraneInterproscan
GO:0008630Biological Processintrinsic apoptotic signaling pathway in response to DNA damageInterproscan
GO:0042803Molecular Functionprotein homodimerization activityInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0097192Biological Processextrinsic apoptotic signaling pathway in absence of ligandInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0005911Cellular Componentcell-cell junctionInterproscan
GO:0050839Molecular Functioncell adhesion molecule bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000070Biological Processmitotic sister chromatid segregationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005828Cellular Componentkinetochore microtubuleInterproscan
GO:0007094Biological Processmitotic spindle assembly checkpoint signalingInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan
GO:1903394Biological Processprotein localization to kinetochore involved in kinetochore assemblyInterproscan
GO:1990423Cellular ComponentRZZ complexInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14405FIP1L1, FIP1; pre-mRNA 3'-end-processing factor FIP1-GTP-binding proteinsko04031deepkoala
Protein kinasesko01001deepkoala
Transcription factorsko03000deepkoala
Messenger RNA biogenesisko03019deepkoala

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