Gene detail

Detailed information of g660.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_237845349.1, glutamate synthase large subunit [Solitalea lacus]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55037	Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=gltB PE=1 SV=1
P96218	Glutamate synthase [NADPH] large chain OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=gltB PE=1 SV=3
P39812	Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain 168) OX=224308 GN=gltA PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000301 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001167 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002087 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003954 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010950 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0012295 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0017397 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0026270 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0041294 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12698 all species →	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan
PF01645 all species →	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF00310 all species →	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan
PF04898 all species →	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan
PF01493 all species →	GXGXG	GXGXG motif	Family	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF00697 all species →	PRAI	N-(5'phosphoribosyl)anthranilate (PRA) isomerase	Domain	Interproscan
PF00218 all species →	IGPS	Indole-3-glycerol phosphate synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013525 all species →	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR026082 all species →	Family	ABC transporter A	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR002489 all species →	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR002932 all species →	Domain	Glutamate synthase domain	Interproscan
IPR017932 all species →	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR036485 all species →	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR050711 all species →	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan
IPR006982 all species →	Domain	Glutamate synthase, central-N	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR013798 all species →	Domain	Indole-3-glycerol phosphate synthase domain	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR001240 all species →	Domain	N-(5'phosphoribosyl) anthranilate isomerase (PRAI) domain	Interproscan
IPR045186 all species →	Family	Indole-3-glycerol phosphate synthase	Interproscan
IPR001468 all species →	Conserved_site	Indole-3-glycerol phosphate synthase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229 all species →	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan
PTHR11938 all species →	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR43184 all species →	MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B	Interproscan
PTHR22854 all species →	TRYPTOPHAN BIOSYNTHESIS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0019676 all species →	Biological Process	ammonia assimilation cycle	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0004425 all species →	Molecular Function	indole-3-glycerol-phosphate synthase activity	Interproscan
GO:0004640 all species →	Molecular Function	phosphoribosylanthranilate isomerase activity	Interproscan
GO:0006568 all species →	Biological Process	tryptophan metabolic process	Interproscan
GO:0000162 all species →	Biological Process	tryptophan biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00265	gltB; glutamate synthase (NADPH) large chain	EC:1.4.1.13	Peptidases and inhibitors	ko01002	deepkoala
K13498	trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase	EC:4.1.1.48 EC:5.3.1.24	Phenylalanine, tyrosine and tryptophan biosynthesis	ko00400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.