Gene detail

Detailed information of g660.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_237845349.1, glutamate synthase large subunit [Solitalea lacus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P55037	Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=gltB PE=1 SV=1
P96218	Glutamate synthase [NADPH] large chain OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=gltB PE=1 SV=3
P39812	Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain 168) OX=224308 GN=gltA PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12698	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00089	Trypsin	Trypsin	Domain	Interproscan
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan
PF01645	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF00310	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan
PF04898	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan
PF01493	GXGXG	GXGXG motif	Family	Interproscan
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF00697	PRAI	N-(5'phosphoribosyl)anthranilate (PRA) isomerase	Domain	Interproscan
PF00218	IGPS	Indole-3-glycerol phosphate synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013525	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR026082	Family	ABC transporter A	Interproscan
IPR043504	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001254	Domain	Serine proteases, trypsin domain	Interproscan
IPR033116	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR009003	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001315	Domain	CARD domain	Interproscan
IPR002489	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR002932	Domain	Glutamate synthase domain	Interproscan
IPR017932	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR029055	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR036485	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR050711	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan
IPR006982	Domain	Glutamate synthase, central-N	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR013798	Domain	Indole-3-glycerol phosphate synthase domain	Interproscan
IPR011060	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR001240	Domain	N-(5'phosphoribosyl) anthranilate isomerase (PRAI) domain	Interproscan
IPR045186	Family	Indole-3-glycerol phosphate synthase	Interproscan
IPR001468	Conserved_site	Indole-3-glycerol phosphate synthase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan
PTHR11938	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR43184	MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B	Interproscan
PTHR22854	TRYPTOPHAN BIOSYNTHESIS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0019676	Biological Process	ammonia assimilation cycle	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0004425	Molecular Function	indole-3-glycerol-phosphate synthase activity	Interproscan
GO:0004640	Molecular Function	phosphoribosylanthranilate isomerase activity	Interproscan
GO:0006568	Biological Process	tryptophan metabolic process	Interproscan
GO:0000162	Biological Process	tryptophan biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13498	trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase	EC:4.1.1.48 EC:5.3.1.24	Peptidases and inhibitors	ko01002	deepkoala
K13498		EC:4.1.1.48 EC:5.3.1.24	Phenylalanine, tyrosine and tryptophan biosynthesis	ko00400	deepkoala