Gene detail

Detailed information of g6602.t1 in Acropora digitifera

Genomic Location: chr3Alt:20770898...20798910
NR annotation: XP_044172529.1, two pore calcium channel protein 2-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6602.t1

ATGGAAACGATGGAGGTTACAACCCCTATATTAGGCAAGGAAGATTTACCAGACGATCTGCATGAAGATGGAATAGGACACACAATAAATCAAGCAGCAGTTTTCTTAGAAGATGCAGTTAAGTATCGATCAATTCATCACAAGGTTGACAGCAAGTCTCTCTGGATGTACAGATGGTATTATAGCAAACCTTTGAGATGGGGATTTTCATTGGTCATTTTTCTCAACCTGATGTTGGCATTTGTTGAAAAACCTTCATCTTTCACGTCCACATCTGATCCTCGTTTCCGAGGTAAAAGACCAGATCCTCCTTGTGGAGTCACAGAATGTGTGGAAATTTTCTTCCTTCTGTGTTTTGTTTGTGATTTGTTTATGAAGAGTCAGTTCCTTGGAAGAAAGACATTCTTGAAGAGTCGATGGCTTCTGACATATTGCATTTTGTTAACAATTTGTTTTTGTGATGTGCTTGTGTCCATCAGTGCTGGATGCAAGGAGCGCATAAGGATTCGCAGAGTTCTGAGGCCTTTCTTCTTGTTGCAAAATTCCTCTCTGATGAAAAAACTGTTACATGCTATCAAACGAACTGTACCTGAAATTCTCAGTGTGCTTTTTCTTCTGCTTTTACATCTATGGTTCTTTGCCATGTGTGGGATGCTAATGTTTCCACAGAAGGCAGCAATGCGGAGTAACAAAACCCGAGCGGACATTGAGTGCAGTCCCGAGCAAATGAGGGCCGAAATTGGCGTTGAGTGCGAAGGATTCTATTACTTCCGCAAACTGGAATTTTCGCTAAGAAGTCTTCTGGTTTTGCTAACAACAGCTAACAATCCAGATGTGATGATGTACGCATATATGAAAAACAGACTTTATGCTGTTTTCTTTATTATTTTTACCATGATAGGGCTTTATTTCTTCTTGAATTTATTAACGGCCATCATTTACAATCAGTTCAGAGGCTACTTGACTAGTTCACTTCAGGCGAGCTTCTTTCGTCGAAGAGTAGGTATAAGAGCCGCGTTTGAGGTTCTTCTTCAAATCCAAGATCCTGATAGTGACTTGCCTCATGACACGATCAGTTCAGAACATGCTAGACGAGCCATTGAAAAAGCACAGATAGGTTCAACAGGAAGGCAACTGGTGCGGAATGCCTTGAGTCGAAATTCAACTGGTCACCTCACTGCTAGAGAGTTCCAAGATCTGTTTGATGTGCTCGTCAAAGTAACCAGAAGACGACAGAGGCCGGCCATGAGTTACGTACAGAACTTTGTTCTCAGAAATATTCAAGTTCTCGTCGCACAGAAAGTGTTTGATTACGTCAGTGATTTTGTTGTAGCAGTCAACGTAGTCGTCATTTCGGTCTTACTAGAATACGAACATGACACATTATGGGAGAATCCGAAATCAATTATAGCGATTGCAAATTTTTTTTTCGTGCTGTATTATGCCTTGGAACAGTTGATAAAACTATGGGCCTTAGGCTGCCAGAGATATCGTTCGTCCATGGTCAATATTTATGCTGGAGTCGTTACGTTAGCACTAGTGTTGGCAGAAATTAGCTACGTCAGTCTCTATGGTTTTCCATTTTCAAATTATAGCCAAGAGAAGTTATCGGAAAATTCTTTGAGAAATCTAACACAAATAATCAACATTCTGATCACATTTCGCTTGTTGAGAATTGTTCCCAATGTTAGGGCTCTTTCTCTTATACTTGAAACACTGCTGAAGTTGTTGAAGAACCTGAGACCTTTTGCTGGAATTATTGTGGCTGTTTATTATGTTTTTGCTGTGCTTGGCATGATGTTATTTGCTAATGTCACTGATCCATCGGATGTAGGAAAACAGGAAACCAGACTTTTAAATAAAAAATGTGGGACTTTTGGCCAGCTTCAGTACTACGCTAATAACTTTGATGACTTTTTTGCTGCCTTGGTAGTGCTGTGGGATCTTATGGTAGTTAACAACTGGCATGTTTTTCTCAAAGAATATGCCAAAGTTGTCAATTGGTGGGCGCTGCTGTATTTTGTGGCGTGGTATTTGATCTCTGTTATTCTTGTTATAAACCTCTTTGTTGCCTTAATTCTGGAGGCTTTTGTCAGCCAATGGGAGACGAAGCAACGAAGACAACGTCAATCTTCTGTGACGCAGACGGACGCCACCACGATAGAAGGAGATCGTTTTCATCAGCTATTCAGCTCAAGCCTGGTTGAACCCTTAGAGGAAGATATAATGCAAGAACTCAGAGGACATGTTCATTGTGAATTCCAAGTTTCTGATCAATCCAGCTCAGAACATATTCGCCCAAGGCGTCGAACCGCCGTCAATTTTCGCTTGTAA

Transcript

chr3Alt.g6602.t1

CAAACAGACTGTCCGATTCCAAACTTCGCTAATCAATTTCATTTTTGACGGTTTGGCGCAGTATTTCATGTCACGGAAAGATATAAGGGATGAGTTCCTTTCGAACAATTCGTTGTTTCGCTTTTCCAATCGTCGAAGTTTAACTTAATCACCACTTAGATGATAGTGAGGCATCTGTCGAATGTTCGTTCAGGTGATGGAAACGATGGAGGTTACAACCCCTATATTAGGCAAGGAAGATTTACCAGACGATCTGCATGAAGATGGAATAGGACACACAATAAATCAAGCAGCAGTTTTCTTAGAAGATGCAGTTAAGTATCGATCAATTCATCACAAGGTTGACAGCAAGTCTCTCTGGATGTACAGATGGTATTATAGCAAACCTTTGAGATGGGGATTTTCATTGGTCATTTTTCTCAACCTGATGTTGGCATTTGTTGAAAAACCTTCATCTTTCACGTCCACATCTGATCCTCGTTTCCGAGGTAAAAGACCAGATCCTCCTTGTGGAGTCACAGAATGTGTGGAAATTTTCTTCCTTCTGTGTTTTGTTTGTGATTTGTTTATGAAGAGTCAGTTCCTTGGAAGAAAGACATTCTTGAAGAGTCGATGGCTTCTGACATATTGCATTTTGTTAACAATTTGTTTTTGTGATGTGCTTGTGTCCATCAGTGCTGGATGCAAGGAGCGCATAAGGATTCGCAGAGTTCTGAGGCCTTTCTTCTTGTTGCAAAATTCCTCTCTGATGAAAAAACTGTTACATGCTATCAAACGAACTGTACCTGAAATTCTCAGTGTGCTTTTTCTTCTGCTTTTACATCTATGGTTCTTTGCCATGTGTGGGATGCTAATGTTTCCACAGAAGGCAGCAATGCGGAGTAACAAAACCCGAGCGGACATTGAGTGCAGTCCCGAGCAAATGAGGGCCGAAATTGGCGTTGAGTGCGAAGGATTCTATTACTTCCGCAAACTGGAATTTTCGCTAAGAAGTCTTCTGGTTTTGCTAACAACAGCTAACAATCCAGATGTGATGATGTACGCATATATGAAAAACAGACTTTATGCTGTTTTCTTTATTATTTTTACCATGATAGGGCTTTATTTCTTCTTGAATTTATTAACGGCCATCATTTACAATCAGTTCAGAGGCTACTTGACTAGTTCACTTCAGGCGAGCTTCTTTCGTCGAAGAGTAGGTATAAGAGCCGCGTTTGAGGTTCTTCTTCAAATCCAAGATCCTGATAGTGACTTGCCTCATGACACGATCAGTTCAGAACATGCTAGACGAGCCATTGAAAAAGCACAGATAGGTTCAACAGGAAGGCAACTGGTGCGGAATGCCTTGAGTCGAAATTCAACTGGTCACCTCACTGCTAGAGAGTTCCAAGATCTGTTTGATGTGCTCGTCAAAGTAACCAGAAGACGACAGAGGCCGGCCATGAGTTACGTACAGAACTTTGTTCTCAGAAATATTCAAGTTCTCGTCGCACAGAAAGTGTTTGATTACGTCAGTGATTTTGTTGTAGCAGTCAACGTAGTCGTCATTTCGGTCTTACTAGAATACGAACATGACACATTATGGGAGAATCCGAAATCAATTATAGCGATTGCAAATTTTTTTTTCGTGCTGTATTATGCCTTGGAACAGTTGATAAAACTATGGGCCTTAGGCTGCCAGAGATATCGTTCGTCCATGGTCAATATTTATGCTGGAGTCGTTACGTTAGCACTAGTGTTGGCAGAAATTAGCTACGTCAGTCTCTATGGTTTTCCATTTTCAAATTATAGCCAAGAGAAGTTATCGGAAAATTCTTTGAGAAATCTAACACAAATAATCAACATTCTGATCACATTTCGCTTGTTGAGAATTGTTCCCAATGTTAGGGCTCTTTCTCTTATACTTGAAACACTGCTGAAGTTGTTGAAGAACCTGAGACCTTTTGCTGGAATTATTGTGGCTGTTTATTATGTTTTTGCTGTGCTTGGCATGATGTTATTTGCTAATGTCACTGATCCATCGGATGTAGGAAAACAGGAAACCAGACTTTTAAATAAAAAATGTGGGACTTTTGGCCAGCTTCAGTACTACGCTAATAACTTTGATGACTTTTTTGCTGCCTTGGTAGTGCTGTGGGATCTTATGGTAGTTAACAACTGGCATGTTTTTCTCAAAGAATATGCCAAAGTTGTCAATTGGTGGGCGCTGCTGTATTTTGTGGCGTGGTATTTGATCTCTGTTATTCTTGTTATAAACCTCTTTGTTGCCTTAATTCTGGAGGCTTTTGTCAGCCAATGGGAGACGAAGCAACGAAGACAACGTCAATCTTCTGTGACGCAGACGGACGCCACCACGATAGAAGGAGATCGTTTTCATCAGCTATTCAGCTCAAGCCTGGTTGAACCCTTAGAGGAAGATATAATGCAAGAACTCAGAGGACATGTTCATTGTGAATTCCAAGTTTCTGATCAATCCAGCTCAGAACATATTCGCCCAAGGCGTCGAACCGCCGTCAATTTTCGCTTGTAAAATAATGGAATGCCCTTACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BWC0	Two pore channel protein 2 OS=Mus musculus OX=10090 GN=Tpcn2 PE=1 SV=1
Q8NHX9	Two pore channel protein 2 OS=Homo sapiens OX=9606 GN=TPCN2 PE=1 SV=2
A0JMD4	Two pore channel protein 2 OS=Danio rerio OX=7955 GN=tpcn2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR028798 all species →	Family	Two pore channel protein 2	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46768 all species →	TWO PORE CALCIUM CHANNEL PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0015280 all species →	Molecular Function	ligand-gated sodium channel activity	Interproscan
GO:0019722 all species →	Biological Process	calcium-mediated signaling	Interproscan
GO:0022832 all species →	Molecular Function	voltage-gated channel activity	Interproscan
GO:0075509 all species →	Biological Process	endocytosis involved in viral entry into host cell	Interproscan
GO:0097682 all species →	Molecular Function	intracellularly phosphatidylinositol-3,5-bisphosphate-gated monatomic cation channel activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14077	TPCN2; two pore calcium channel protein 2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.