Gene detail

Detailed information of g663.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAB4041808.1, zinc finger BED domain-containing 1-like [Paramuricea clavata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4UU85	Cyclic di-GMP phosphodiesterase response regulator RpfG OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=rpfG PE=1 SV=1
O67821	Uncharacterized protein aq_2027 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_2027 PE=4 SV=1
Q5M7N6	Forkhead box protein J1 OS=Xenopus tropicalis OX=8364 GN=foxj1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000206 (this species only)
Orthogroup (gene family)	OG0000715 (this species only)
Orthogroup (gene family)	OG0001828 (this species only)
Orthogroup (gene family)	OG0002042 (this species only)
Orthogroup (gene family)	OG0003552 (this species only)
Orthogroup (gene family)	OG0006664 (this species only)
Orthogroup (gene family)	OG0007999 (this species only)
Orthogroup (gene family)	OG0012151 (this species only)
Orthogroup (gene family)	OG0012454 (this species only)
Orthogroup (gene family)	OG0012499 (this species only)
Orthogroup (gene family)	OG0013210 (this species only)
Orthogroup (gene family)	OG0014936 (this species only)
Orthogroup (gene family)	OG0022259 (this species only)
Orthogroup (gene family)	OG0024476 (this species only)
Orthogroup (gene family)	OG0170691 (this species only)
Transcription factor family	Fork_head · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03969 all species →	AFG1_ATPase	AFG1-like ATPase	Family	Interproscan
PF02197 all species →	RIIa	Regulatory subunit of type II PKA R-subunit	Domain	Interproscan
PF01813 all species →	ATP-synt_D	ATP synthase subunit D	Family	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00852 all species →	Glyco_transf_10	Glycosyltransferase family 10 (fucosyltransferase) C-term	Family	Interproscan
PF17039 all species →	Glyco_tran_10_N	Fucosyltransferase, N-terminal	Domain	Interproscan
PF13487 all species →	HD_5	HD domain	Domain	Interproscan
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005654 all species →	Family	ATPase, AFG1-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003117 all species →	Domain	cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain	Interproscan
IPR002699 all species →	Family	ATPase, V1 complex, subunit D	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR029787 all species →	Homologous_superfamily	Nucleotide cyclase	Interproscan
IPR001503 all species →	Family	Glycosyl transferase family 10	Interproscan
IPR038577 all species →	Homologous_superfamily	GT10-like, C-terminal domain superfamily	Interproscan
IPR031481 all species →	Domain	Fucosyltransferase, N-terminal	Interproscan
IPR003607 all species →	Domain	HD/PDEase domain	Interproscan
IPR037522 all species →	Domain	HD-GYP domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR047512 all species →	Domain	Forkhead box protein J1, forkhead domain	Interproscan
IPR047513 all species →	Family	Forkhead box protein J1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12169 all species →	ATPASE N2B	Interproscan
PTHR11671 all species →	V-TYPE ATP SYNTHASE SUBUNIT D	Interproscan
PTHR18947 all species →	HOOK PROTEINS	Interproscan
PTHR11929 all species →	ALPHA- 1,3 -FUCOSYLTRANSFERASE	Interproscan
PTHR43155 all species →	CYCLIC DI-GMP PHOSPHODIESTERASE PA4108-RELATED	Interproscan
PTHR46805 all species →	FORKHEAD BOX PROTEIN J1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:0033176 all species →	Cellular Component	proton-transporting V-type ATPase complex	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030705 all species →	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008417 all species →	Molecular Function	fucosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0036065 all species →	Biological Process	fucosylation	Interproscan
GO:0046920 all species →	Molecular Function	alpha-(1->3)-fucosyltransferase activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02149	ATPeV1D, ATP6M; V-type H+-transporting ATPase subunit D	-	Rheumatoid arthritis	ko05323	deepkoala
K09402	FOXJ1; forkhead box protein J1	-	Transcription factors	ko03000	deepkoala
K14464	FUT-1, FucTC; alpha-1,3-fucosyltransferase	EC:2.4.1.-	Various types of N-glycan biosynthesis	ko00513	deepkoala
K25135	K25135; cyclic di-GMP phosphodiesterase	EC:3.1.4.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.