Detailed information of g665.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_046841391.1, probable ATP-dependent RNA helicase DDX20 isoform X2 [Xenia sp. Carnegie-2017]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9UHI6Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens OX=9606 GN=DDX20 PE=1 SV=2
P0C218Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio OX=7955 GN=ddx20 PE=3 SV=1
Q9JJY4Probable ATP-dependent RNA helicase DDX20 OS=Mus musculus OX=10090 GN=Ddx20 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17827PrmC_NPrmC N-terminal domainDomainInterproscan
PF05175MTSMethyltransferase small domainDomainInterproscan
PF16381Coatomer_g_CplaCoatomer subunit gamma-1 C-terminal appendage platformDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF04046PSPPSPFamilyInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040758DomainRelease factor glutamine methyltransferase, N-terminal domainInterproscan
IPR007848DomainMethyltransferase small domainInterproscan
IPR004556FamilyMethyltransferase HemK-likeInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR019874FamilyProtein-(glutamine-N5) methyltransferase, release factor-specificInterproscan
IPR002052Conserved_siteDNA methylase, N-6 adenine-specific, conserved siteInterproscan
IPR050320FamilyProtein N5-glutamine methyltransferaseInterproscan
IPR012295Homologous_superfamilyTBP domain superfamilyInterproscan
IPR009028Homologous_superfamilyCoatomer/calthrin adaptor appendage, C-terminal subdomainInterproscan
IPR017106FamilyCoatomer gamma subunitInterproscan
IPR032154DomainCoatomer subunit gamma, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR052115FamilyNuclear exosome targeting complex subunit ZCCHC8Interproscan
IPR006568DomainPSP, proline-richInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR033100FamilyExosome complex component RRP45Interproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR050590FamilyExosome complex component Rrp42 subfamilyInterproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18895HEMK METHYLTRANSFERASEInterproscan
PTHR10261COATOMER SUBUNIT GAMMAInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR13316ZINC FINGER, CCHC DOMAIN CONTAINING 8Interproscan
PTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0006479Biological Processprotein methylationInterproscan
GO:0008276Molecular Functionprotein methyltransferase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0032259Biological ProcessmethylationInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0005793Cellular Componentendoplasmic reticulum-Golgi intermediate compartmentInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0009306Biological Processprotein secretionInterproscan
GO:0030126Cellular ComponentCOPI vesicle coatInterproscan
GO:0072384Biological Processorganelle transport along microtubuleInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0032797Cellular ComponentSMN complexInterproscan
GO:0034470Biological Processobsolete ncRNA processingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0000178Cellular Componentexosome (RNase complex)Interproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0016075Biological ProcessrRNA catabolic processInterproscan
GO:0017091Molecular FunctionmRNA 3'-UTR AU-rich region bindingInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034473Biological ProcessU1 snRNA 3'-end processingInterproscan
GO:0034475Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0034476Biological ProcessU5 snRNA 3'-end processingInterproscan
GO:0043928Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071028Biological Processnuclear mRNA surveillanceInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071042Biological Processnuclear polyadenylation-dependent mRNA catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03678RRP45, EXOSC9; exosome complex component RRP45-Translation factorsko03012deepkoala
Messenger RNA biogenesisko03019deepkoala

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