Gene detail

Detailed information of g6665.t1 in Tripedalia maipoensis

Genomic Location: scaffold_3:26153675...26185862
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6665.t1

ATGATGAGTAATCATTCAGAGAATAACAACACTGAATCCACCACAAATCATCACGCCAGAAGACGTGATCACATAACCTGGCATAAAGATGCCCTCAAGAAATTGCAAGACCGAGGGATTCCTAAGGATAGAGCGGAAAGAGCCCTAGTTGTAACTGGTCATGTTGATGTACCGTCAGCTCTTAGTTGGTTAAAAAGCCATAGTTCAGACTCAAGTGTAAGTCTGCCAAACCCAAGAGAATACGTCCTCTTCCTATGTCCAACAGGACCCTTTAGACAGATCTTGGACAAATTTTGGGAGAACTCCTACCTGCATTGCGGGAGAAATGCAGCACATGGATCATTCCCTCATATTACCTTGTCTTCATTTTTCAAGGTGGAAGACTTCAAAGTACCAGCACTTCTGGATCTACTGGATGAACTTGTGGATTATACCCTAATAAAAAAACCGGAGCGTTTTAGGTTATTTTTTCATAGATCGCAGAATTACATCGGATTTTTCCTTGATGAATTATCGGTGGCGTGGCTCCAGGATATAGTTGAAAAATTGTGTGACAAAATGCTTAGCATGTTTAATGTTAAGGCTAGCCCTCATGGAAGGCAGCTCCATTTGACGCTTGCATATCAATTTGATCAGCACCATCAAAAGGCTTTAGAGAACCTTGCGAAGGAAATCAATGTAGATGCATCAGGAGGATGGGAGTTGCATCTGTACTCTAGAGATCCGAGGTTTTCCAATAAAGAGATCCTGATCGCAACACATTACCATAGTCCGCGCTCAAAAGAGGAATTAGAGCTGATTCCCGAACGATACGTGATTCTCGAATCCTCTAGCACTCCGTATAACGGTTGGTACAAAGGCACCTGTTTTTCCACGGGGAAAGGTGGAATATTTCCTGGAAATTACACTGAGAAGTCATCTGGATGGAAATGCTGGACCAAACATTGGGTAAGCCCCTTAGTTATCAGCAATGGAGTCAAGCAAAGCCGCTCTCGGGATGCATCCCCTATGCGAGAAATGGTCACATTGCCCAAGCAGCCTTCAACCTCACCTAAGACTCTTCCAAGGAGTTTTTCTCAAAAACCCAGGACACCACCTCGATCAACAAGTTTTAGTAAGACACTGACTGCTCTGTCACACAAAAACAGCACGAAAACGCGCAAGCCTATCCCTAGTGAGATGATGCAGACCTCATCTCGACGCATATTTGTAATGCGACACGCGGAACGTGTTGACATGACCTTTGGCCATGACTGGATTAGTAAGTTTTTTGACGAAGAAGGAATATACCATAGGTGGAATCTGAACTTACCAAAAAAAATACCTGCAAGGAAAGAAGGACCATATAGTTTCTTTCAGGACTCTCCTATTACTGAAATAGGAGCTTTTCAAGCAAGACTGACTGGAGAATCATTACGAGCTCAGGGAATCCAAGTAACCCACGTGTTTTCATCGCCTGCGTTGCGATCTGTACAGACCGCGCAAGCCGTGCTAGAAGGAATGTCTGCCAGTGATGTGGTCAAAATCAAGGTTGAACCTGCCCTTTACGAATGGTTGATTTGGTGCGGAGGGGTTCTTCCGCACTGGTTGACGATCGACGAATTGATTGATGCTGGATTGAATGTCGACACCTCTTATATTCCAGGTACCGTGGTAAATAGCTCTCGTCTCAATGAGTCGTGTGAACAGTTCTACAACCGGACGTATAGCTGCATGAAGTTTATTTTAAAACAAGTCGAAGGTAGAAATGGCGATGTTCTTGTTGTAGGACACGCAGCATCCCTTGAGGTCTGTACTCGACAGTTAACTGGAGGTGCTCCTAAGACACAAGAAGATTTAGTGAGAGTTGTACAGAGAATACCTTATTGTGGTATGAGTGTCATAGATGATCAGTACGGACGTTGGAAAATGATACAACCACCGATTCCTGCGCTAACTCACGGCCAAAATCATCGCTTTGACTGGACTATTCTTGCTGGTAAGCAGCCCATGAAGCCATCTGCAGTTTGA

Transcript

g6665.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00300 all species →	His_Phos_1	Histidine phosphatase superfamily (branch 1)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan
IPR009097 all species →	Homologous_superfamily	Cyclic phosphodiesterase	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051710 all species →	Family	Phosphatase and SH3 domain-containing protein	Interproscan
IPR013078 all species →	Family	Histidine phosphatase superfamily, clade-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16469 all species →	UBIQUITIN-ASSOCIATED AND SH3 DOMAIN-CONTAINING BA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18993	UBASH3, STS; ubiquitin-associated and SH3 domain-containing protein	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.