Gene detail

Detailed information of g667.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: EDO39989.1, predicted protein, partial [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6DRG1	RNA-binding protein 42 OS=Danio rerio OX=7955 GN=rbm42 PE=2 SV=2
Q66KL9	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1
Q0P5L0	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF10250	O-FucT	GDP-fucose protein O-fucosyltransferase	Family	Interproscan
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00856	SET	SET domain	Family	Interproscan
PF04032	Rpr2	RNAse P Rpr2/Rpp21/SNM1 subunit domain	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR019378	Family	GDP-fucose protein O-fucosyltransferase	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR039808	Family	Cadherin	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR001073	Domain	C1q domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034215	Domain	RBM42, RNA recognition motif	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050825	Family	RNA Recognition Motif and Poly(A) Binding Protein Families	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR026099	Family	Outer dense fibre protein 2-related	Interproscan
IPR001214	Domain	SET domain	Interproscan
IPR047266	Domain	N-lysine methyltransferase KMT5A-like, SET domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR051760	Family	Histone-lysine N-methyltransferase KMT5A	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR007175	Family	Ribonuclease P subunit, Rpr2/Snm1/Rpp21	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44196	DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B	Interproscan
PTHR31469	OS07G0633600 PROTEIN	Interproscan
PTHR24027	CADHERIN-23	Interproscan
PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	Interproscan
PTHR23162	OUTER DENSE FIBER OF SPERM TAILS 2	Interproscan
PTHR46167	N-LYSINE METHYLTRANSFERASE KMT5A	Interproscan
PTHR14742	RIBONUCLEASE P SUBUNIT P21	Interproscan
PTHR34072	ENZYMATIC POLYPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:1902017	Biological Process	regulation of cilium assembly	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005700	Cellular Component	polytene chromosome	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034771	Biological Process	obsolete histone H4-K20 monomethylation	Interproscan
GO:0042799	Molecular Function	histone H4K20 methyltransferase activity	Interproscan
GO:0043516	Biological Process	regulation of DNA damage response, signal transduction by p53 class mediator	Interproscan
GO:0140110	Molecular Function	transcription regulator activity	Interproscan
GO:0005655	Cellular Component	nucleolar ribonuclease P complex	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11428	SETD8; [histone H4]-lysine20 N-methyltransferase SETD8	EC:2.1.1.361	Domain-containing proteins not elsewhere classified	ko04990	deepkoala
			Transfer RNA biogenesis	ko03016	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala