Gene detail

Detailed information of g668.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: OGB92571.1, hypothetical protein A3H39_07300 [candidate division NC10 bacterium RIFCSPLOWO2_02_FULL_66_22]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2SQ70	Porphobilinogen deaminase OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=hemC PE=3 SV=1
A7MXU9	Porphobilinogen deaminase OS=Vibrio campbellii (strain ATCC BAA-1116) OX=2902295 GN=hemC PE=3 SV=1
Q8DD85	Porphobilinogen deaminase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=hemC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000145 (this species only)
Orthogroup (gene family)	OG0000586 (this species only)
Orthogroup (gene family)	OG0002941 (this species only)
Orthogroup (gene family)	OG0003289 (this species only)
Orthogroup (gene family)	OG0004016 (this species only)
Orthogroup (gene family)	OG0004112 (this species only)
Orthogroup (gene family)	OG0005328 (this species only)
Orthogroup (gene family)	OG0005427 (this species only)
Orthogroup (gene family)	OG0005573 (this species only)
Orthogroup (gene family)	OG0011894 (this species only)
Orthogroup (gene family)	OG0015109 (this species only)
Orthogroup (gene family)	OG0016181 (this species only)
Orthogroup (gene family)	OG0027121 (this species only)
Orthogroup (gene family)	OG0170809 (this species only)
Orthogroup (gene family)	OG0172651 (this species only)
Transcription factor family	zf-CCCH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00631 all species →	G-gamma	GGL domain	Domain	Interproscan
PF01488 all species →	Shikimate_DH	Shikimate / quinate 5-dehydrogenase	Family	Interproscan
PF03900 all species →	Porphobil_deamC	Porphobilinogen deaminase, C-terminal domain	Domain	Interproscan
PF00745 all species →	GlutR_dimer	Glutamyl-tRNAGlu reductase, dimerisation domain	Domain	Interproscan
PF01379 all species →	Porphobil_deam	Porphobilinogen deaminase, dipyromethane cofactor binding domain	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF00112 all species →	Peptidase_C1	Papain family cysteine protease	Domain	Interproscan
PF03446 all species →	NAD_binding_2	NAD binding domain of 6-phosphogluconate dehydrogenase	Domain	Interproscan
PF14833 all species →	NAD_binding_11	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015898 all species →	Domain	G-protein gamma-like domain	Interproscan
IPR001770 all species →	Family	G-protein, gamma subunit	Interproscan
IPR036284 all species →	Homologous_superfamily	G-protein gamma-like domain superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR006151 all species →	Domain	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	Interproscan
IPR000860 all species →	Family	Porphobilinogen deaminase	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR022419 all species →	Binding_site	Porphobilinogen deaminase, dipyrromethane cofactor binding site	Interproscan
IPR036803 all species →	Homologous_superfamily	Porphobilinogen deaminase, C-terminal domain superfamily	Interproscan
IPR022418 all species →	Domain	Porphobilinogen deaminase, C-terminal	Interproscan
IPR015896 all species →	Domain	Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain	Interproscan
IPR022417 all species →	Domain	Porphobilinogen deaminase, N-terminal	Interproscan
IPR036453 all species →	Homologous_superfamily	Glutamyl tRNA-reductase dimerization domain superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR000668 all species →	Domain	Peptidase C1A, papain C-terminal	Interproscan
IPR025661 all species →	Active_site	Cysteine peptidase, asparagine active site	Interproscan
IPR039417 all species →	Domain	Papain-like cysteine endopeptidase	Interproscan
IPR013128 all species →	Family	Peptidase C1A	Interproscan
IPR025660 all species →	Active_site	Cysteine peptidase, histidine active site	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR006115 all species →	Domain	6-phosphogluconate dehydrogenase, NADP-binding	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR029154 all species →	Domain	3-hydroxyisobutyrate dehydrogenase-like, NAD-binding domain	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR015815 all species →	Family	3-hydroxyisobutyrate dehydrogenase-related	Interproscan
IPR052792 all species →	Family	Thioredoxin domain-containing protein 11	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13809 all species →	GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT	Interproscan
PTHR11557 all species →	PORPHOBILINOGEN DEAMINASE	Interproscan
PTHR46156 all species →	CCCH ZINGC FINGER	Interproscan
PTHR12411 all species →	CYSTEINE PROTEASE FAMILY C1-RELATED	Interproscan
PTHR18937 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan
PTHR43060 all species →	3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED	Interproscan
PTHR46497 all species →	THIOREDOXIN DOMAIN-CONTAINING PROTEIN 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005834 all species →	Cellular Component	heterotrimeric G-protein complex	Interproscan
GO:0031681 all species →	Molecular Function	G-protein beta-subunit binding	Interproscan
GO:0004418 all species →	Molecular Function	hydroxymethylbilane synthase activity	Interproscan
GO:0033014 all species →	Biological Process	tetrapyrrole biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006783 all species →	Biological Process	heme biosynthetic process	Interproscan
GO:0018160 all species →	Biological Process	peptidyl-pyrromethane cofactor linkage	Interproscan
GO:0008883 all species →	Molecular Function	glutamyl-tRNA reductase activity	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0008656 all species →	Molecular Function	cysteine-type endopeptidase activator activity involved in apoptotic process	Interproscan
GO:0010952 all species →	Biological Process	positive regulation of peptidase activity	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:2001235 all species →	Biological Process	positive regulation of apoptotic signaling pathway	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g668.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.