Gene detail

Detailed information of g6699.t1.1 in Haliclystus octoradiatus

Genomic Location: not available for this species
NR annotation: XP_047138763.1, stonin-1 [Hydra vulgaris]
Species abbreviation HOCTO · all data for this species · gene families

Sequence

CDS

g6699.t1

ATGGAGGGATGGATTAAATTCGATGAACCTAATGGTCATCACTATCAACAAACACAGGTTATTTTACCATCGACTAATTATGGAAGTGCCCGAAAGATAGAGAGGATCGCATTAAGCCGTTCTGCCTCACAACCGTACAGCAGCATTATCAATAGTAAATCATCACTCCCTTATGCTGACGGTGATGGACTCCTTGTCACTCGTGGTGAATGGGTCTCGTTTGACGGGCCTTTAACTTCAACTGAAAATGAACATCCATTTTTTGTACCACGTAGAGCTAGCGGTCCCCGATTTGCACGATCAGCAAGTGAATATGGTTCAACAAAAACACCTTGCGGTTATTCGACGACGGATGGAACCACAAGAGTATCATCATTGAAGAAAGGGAAAGGTACATCATCTGcaaattcaagttttaaaagACCGCCCAGCGATTCGAATGAACGTGATTTAGTTAACGAAGGATTATTTGAAGCGATTGATCAATTACATGGCGGTAAATTAGCAAATAAATGCACACGTGGCAATAGTATTGATCGAGATATGATTGTTAGAGTAGAATCATGTAACTGTCACCGGCCATCGATTGATCGTGCAAGATGTAGCTCATATACAAGTGATGGACATCAGATTAATTCAAGTATCTCATTAGATAGTACTGATAGCGTTGATGATCAGGAAGctaataaaaattatcataGACTCAGTGCTCGTGAAAGTAATCGTAGCAATGATTGTGACAATATGATTGATACAGTTGTAACACCAGATACGGACAAtgtttttaatacggataataATACATCATACAACGACAATGCAAATGACAATGCTGAATCACtcaattatgacgtcattgcAGAGCCATTGGATGTTTATCCGCTAAAAGAGAAACGAGAGGATTGGGCTATGTTGTATAGATACCCACAAAGGAAACGAAGACTGGGTTCTAGAGAATGGCTACCTGTTTCGATTACGATACGAGGTGATACATTAAGATTATTTGGACTAATGGAGAATATGGAAGTTGTAAAGGAAATACCTTTACAGccattttttgtattttctgtaCCACGTTTACATAAGAACGACAGTATCAATAAAGTTCATTGTGTTACTTTGCAGTATGTCAAATATAAAGAGACACGTAGAGTGCAATTGAAATCTCAAGTAGACCACACTCCAGTCTATACACCTGTATTAAAAGTAGCCAATAGTAATTATAAACTGTTGACTGAATTTGTTGAAGCTGTTGATGACGTAATTCGTAAGATTCCTACTTACCGTCACAAAGGTATCATTTACAAGCATCAAGAGGTATTTATTGACTGTGATgatgtttgtaaatttctccTGTCAGGTAAAGGGAATATAATCAAGTATAATATTACGTCACATATTCGATTACGTGCCTTTTTGACAGGGCTACCACATGTCACAGTCCATATTAATGACTGTTCAACGAGATGTATCCAGGAGATGACCTTAGGAGATGACCCAAGTCGTCGAACTAGTAAACCAATCAAATGGATAACCCCATTGGAAGACGAATATCACCCTTGTGTCAGCGTTCAAGAATCAAAAGACAAAGGTGGTATTGTACTTAGTCCGCCGGATGGTTGCAGTATAGAGATTATGAGATTCCGTGTGAAAAACACCAAACAACTGCCATTGATTGCTACTTCATGCTTAGAGATAATTGCTGGTAACTTAGTTGAGCTTCGCGCTGATATAAAAATTTGCAACGATTTCAGTTTAAGGAAGGAACGAAGGAATGATGTTGTTCTTAGATTTCCAATACCTAATTCATGGAcatcaatgtttgttaaatcAAAACGGCTTGATGGCCGAGCTAAATACGTCGTTGCTACTGCTGACCCAAGAACAATGGTTACTCAAATCGGACGTAACTCACGCTGTGCTTTAGAGGTAACCATAGGGACTGCCCAATACGAGCCTGAGTTTAGTGCATTGGTATGGCGACTTGGTAGCCTCCCTTTCGTTGGGAATGGGCAGCCAATTGACTTTgtacaaaaatttaaatgtcgTCTAGAAGTGCCGTTCGAGATTCATGCACCTGATGGCTTCCGCCCTTATTCGGAGTTAGAATATAATGTTCCGCATGCGTTAGGGTCAGACGTGACTGTACGTGAAGTATTACTATCAGATGGCCATACACCAGATAAATGGGTTTGTTACAGTGGACGCTATTCTTATAAGATATTGATGAAGATAATTGACCACGGAAAAGAATTTATACGAAAAGATatagtataa

Transcript

g6699.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007811 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012320 all species →	Domain	Stonin homology	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR050431 all species →	Family	Adaptor complexes medium subunit	Interproscan
IPR001392 all species →	Family	Clathrin adaptor, mu subunit	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529 all species →	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g6699.t1.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.