Gene detail

Detailed information of g67.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PCI27347.1, flagellar motor switch protein FliM [SAR324 cluster bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q51465	Flagellar motor switch protein FliM OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=fliM PE=3 SV=2
P26418	Flagellar motor switch protein FliM OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=fliM PE=1 SV=1
P06974	Flagellar motor switch protein FliM OS=Escherichia coli (strain K12) OX=83333 GN=fliM PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10442	FIST_C	FIST C domain	Domain	Interproscan
PF02154	FliM	Flagellar motor switch protein FliM	Family	Interproscan
PF01052	FliMN_C	Type III flagellar switch regulator (C-ring) FliN C-term	Family	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00557	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF05195	AMP_N	Aminopeptidase P, N-terminal domain	Domain	Interproscan
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019494	Domain	FIST, C-domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001689	Family	Flagellar motor switch protein FliM	Interproscan
IPR028976	Homologous_superfamily	CheC-like superfamily	Interproscan
IPR036429	Homologous_superfamily	SpoA-like superfamily	Interproscan
IPR001543	Domain	Flagellar motor switch protein FliN-like, C-terminal domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR006529	Family	U2 snRNP auxilliary factor, large subunit, splicing factor	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036005	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR000994	Domain	Peptidase M24	Interproscan
IPR007865	Domain	Aminopeptidase P, N-terminal	Interproscan
IPR029149	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR003892	Domain	Ubiquitin system component CUE	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14939	F-BOX ONLY PROTEIN 22	Interproscan
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR30034	FLAGELLAR MOTOR SWITCH PROTEIN FLIM	Interproscan
PTHR23139	RNA-BINDING PROTEIN	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR43226	XAA-PRO AMINOPEPTIDASE 3	Interproscan
PTHR12493	CUE DOMAIN CONTAINING 2	Interproscan
PTHR43313	SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003774	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0009425	Cellular Component	bacterial-type flagellum basal body	Interproscan
GO:0071973	Biological Process	bacterial-type flagellum-dependent cell motility	Interproscan
GO:0050918	Biological Process	positive chemotaxis	Interproscan
GO:0071978	Biological Process	bacterial-type flagellum-dependent swarming motility	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000243	Cellular Component	commitment complex	Interproscan
GO:0008187	Molecular Function	poly-pyrimidine tract binding	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan
GO:0030628	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan
GO:0089701	Cellular Component	U2AF complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0030145	Molecular Function	manganese ion binding	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0004177	Molecular Function	aminopeptidase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008233	Molecular Function	peptidase activity	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0008202	Biological Process	steroid metabolic process	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12837	U2AF2; splicing factor U2AF 65 kDa subunit	-	Bacterial motility proteins	ko02035	deepkoala
			Peptidases and inhibitors	ko01002	deepkoala
			Spliceosome	ko03041	deepkoala