Gene detail

Detailed information of g672.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_021353563.1, acyl-CoA-binding domain-containing protein 6-like [Mizuhopecten yessoensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q3A6U0	Phosphate import ATP-binding protein PstB OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=pstB PE=3 SV=1
Q30YR3	Phosphate import ATP-binding protein PstB OS=Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) OX=207559 GN=pstB PE=3 SV=1
Q3K4F5	Phosphate import ATP-binding protein PstB OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=pstB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181	FH2	Formin Homology 2 Domain	Family	Interproscan
PF00169	PH	PH domain	Domain	Interproscan
PF07731	Cu-oxidase_2	Multicopper oxidase	Domain	Interproscan
PF07774	EMC1_C	ER membrane protein complex subunit 1, C-terminal	Domain	Interproscan
PF00394	Cu-oxidase	Multicopper oxidase	Domain	Interproscan
PF07732	Cu-oxidase_3	Multicopper oxidase	Domain	Interproscan
PF13360	PQQ_2	PQQ-like domain	Repeat	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF10508	Proteasom_PSMB	Proteasome non-ATPase 26S subunit	Repeat	Interproscan
PF01026	TatD_DNase	TatD related DNase	Domain	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF02019	WIF	WIF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR015425	Domain	Formin, FH2 domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051425	Family	Formin Homology	Interproscan
IPR042201	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR033138	Conserved_site	Multicopper oxidases, conserved site	Interproscan
IPR011706	Domain	Multicopper oxidase, C-terminal	Interproscan
IPR026895	Family	ER membrane protein complex subunit 1	Interproscan
IPR008972	Homologous_superfamily	Cupredoxin	Interproscan
IPR018391	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011678	Domain	ER membrane protein complex subunit 1, C-terminal	Interproscan
IPR001117	Domain	Multicopper oxidase, second cupredoxin domain	Interproscan
IPR011707	Domain	Multicopper oxidase-like, N-terminal	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR002372	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR002355	Binding_site	Multicopper oxidase, copper-binding site	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR035984	Homologous_superfamily	Acyl-CoA binding protein superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR019538	Family	26S proteasome non-ATPase regulatory subunit 5	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR001130	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR050891	Family	TatD-type Metallo-dependent Hydrolase	Interproscan
IPR018228	Conserved_site	Deoxyribonuclease, TatD-related, conserved site	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035906	Homologous_superfamily	MetI-like superfamily	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR005670	Family	Phosphate import ATP-binding protein PstB-like	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR038677	Homologous_superfamily	WIF domain superfamily	Interproscan
IPR003306	Domain	WIF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23227	BUCENTAUR RELATED	Interproscan
PTHR45725	FORMIN HOMOLOGY 2 FAMILY MEMBER	Interproscan
PTHR21573	UNCHARACTERIZED	Interproscan
PTHR15735	FCH AND DOUBLE SH3 DOMAINS PROTEIN	Interproscan
PTHR24119	ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6	Interproscan
PTHR13554	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED	Interproscan
PTHR10060	TATD FAMILY DEOXYRIBONUCLEASE	Interproscan
PTHR43423	ABC TRANSPORTER I FAMILY MEMBER 17	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0034975	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0072546	Cellular Component	EMC complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000062	Molecular Function	fatty-acyl-CoA binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0043248	Biological Process	proteasome assembly	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0008296	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005315	Molecular Function	phosphate transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0035435	Biological Process	phosphate ion transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03424	tatD; TatD DNase family protein	EC:3.1.21.-	Enzymes with EC numbers	-	deepkoala