Gene detail

Detailed information of g675.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: KAJ7334340.1, ATP-dependent RNA helicase A [Desmophyllum pertusum]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68FK8	ATP-dependent RNA helicase A protein OS=Xenopus laevis OX=8355 GN=dhx9 PE=2 SV=1
Q28141	ATP-dependent RNA helicase A OS=Bos taurus OX=9913 GN=DHX9 PE=1 SV=1
Q5R874	ATP-dependent RNA helicase A OS=Pongo abelii OX=9601 GN=DHX9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000114 (this species only)
Orthogroup (gene family)	OG0000142 (this species only)
Orthogroup (gene family)	OG0000674 (this species only)
Orthogroup (gene family)	OG0000684 (this species only)
Orthogroup (gene family)	OG0000998 (this species only)
Orthogroup (gene family)	OG0001145 (this species only)
Orthogroup (gene family)	OG0001350 (this species only)
Orthogroup (gene family)	OG0001981 (this species only)
Orthogroup (gene family)	OG0005190 (this species only)
Orthogroup (gene family)	OG0005362 (this species only)
Orthogroup (gene family)	OG0024484 (this species only)
Orthogroup (gene family)	OG0025627 (this species only)
Orthogroup (gene family)	OG0059781 (this species only)
Orthogroup (gene family)	OG0080456 (this species only)
Orthogroup (gene family)	OG0171254 (this species only)
Transcription factor family	THAP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF08686 all species →	PLAC	PLAC (protease and lacunin) domain	Domain	Interproscan
PF05485 all species →	THAP	THAP domain	Domain	Interproscan
PF12774 all species →	AAA_6	Hydrolytic ATP binding site of dynein motor region	Domain	Interproscan
PF08393 all species →	DHC_N2	Dynein heavy chain, N-terminal region 2	Family	Interproscan
PF08544 all species →	GHMP_kinases_C	GHMP kinases C terminal	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00497 all species →	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan
PF04069 all species →	OpuAC	Substrate binding domain of ABC-type glycine betaine transport system	Family	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan
IPR045112 all species →	Family	Protein Peter Pan-like	Interproscan
IPR010909 all species →	Domain	PLAC	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR038441 all species →	Homologous_superfamily	THAP-type zinc finger superfamily	Interproscan
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR026516 all species →	Family	THAP domain-containing protein 1/10	Interproscan
IPR042228 all species →	Homologous_superfamily	Dynein heavy chain, linker, subdomain 3	Interproscan
IPR035699 all species →	Domain	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Interproscan
IPR042222 all species →	Homologous_superfamily	Dynein heavy chain, domain 2, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043157 all species →	Homologous_superfamily	Dynein heavy chain, AAA1 domain, small subdomain	Interproscan
IPR013602 all species →	Domain	Dynein heavy chain, linker	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036554 all species →	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052203 all species →	Family	GHMP Kinase-Related Enzymes	Interproscan
IPR013750 all species →	Domain	GHMP kinase, C-terminal domain	Interproscan
IPR001638 all species →	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR051455 all species →	Family	Bacterial solute-binding protein 3	Interproscan
IPR007210 all species →	Domain	ABC-type glycine betaine transport system, substrate-binding domain	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan
PTHR12661 all species →	PETER PAN-RELATED	Interproscan
PTHR46600 all species →	THAP DOMAIN-CONTAINING	Interproscan
PTHR45703 all species →	DYNEIN HEAVY CHAIN	Interproscan
PTHR32463 all species →	L-FUCOSE KINASE	Interproscan
PTHR30085 all species →	AMINO ACID ABC TRANSPORTER PERMEASE	Interproscan
PTHR12461 all species →	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050684 all species →	Biological Process	regulation of mRNA processing	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0042352 all species →	Biological Process	GDP-L-fucose salvage	Interproscan
GO:0050201 all species →	Molecular Function	fucokinase activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0043190 all species →	Cellular Component	ATP-binding cassette (ABC) transporter complex	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g675.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.