Detailed information of g675.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAJ7334340.1, ATP-dependent RNA helicase A [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q68FK8ATP-dependent RNA helicase A protein OS=Xenopus laevis OX=8355 GN=dhx9 PE=2 SV=1
Q28141ATP-dependent RNA helicase A OS=Bos taurus OX=9913 GN=DHX9 PE=1 SV=1
Q5R874ATP-dependent RNA helicase A OS=Pongo abelii OX=9601 GN=DHX9 PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07717OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF19030TSP1_ADAMTSThrombospondin type 1 domainDomainInterproscan
PF08686PLACPLAC (protease and lacunin) domainDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF12774AAA_6Hydrolytic ATP binding site of dynein motor regionDomainInterproscan
PF08393DHC_N2Dynein heavy chain, N-terminal region 2FamilyInterproscan
PF08544GHMP_kinases_CGHMP kinases C terminal FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00497SBP_bac_3Bacterial extracellular solute-binding proteins, family 3DomainInterproscan
PF04069OpuACSubstrate binding domain of ABC-type glycine betaine transport systemFamilyInterproscan
PF00435SpectrinSpectrin repeatDomainInterproscan
PF13621Cupin_8Cupin-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011709DomainDEAD-box helicase, OB foldInterproscan
IPR045112FamilyProtein Peter Pan-likeInterproscan
IPR010909DomainPLACInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR038441Homologous_superfamilyTHAP-type zinc finger superfamilyInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR026516FamilyTHAP domain-containing protein 1/10Interproscan
IPR042228Homologous_superfamilyDynein heavy chain, linker, subdomain 3Interproscan
IPR035699DomainDynein heavy chain, hydrolytic ATP-binding dynein motor regionInterproscan
IPR042222Homologous_superfamilyDynein heavy chain, domain 2, N-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR043157Homologous_superfamilyDynein heavy chain, AAA1 domain, small subdomainInterproscan
IPR013602DomainDynein heavy chain, linkerInterproscan
IPR026983FamilyDynein heavy chainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR036554Homologous_superfamilyGHMP kinase, C-terminal domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR052203FamilyGHMP Kinase-Related EnzymesInterproscan
IPR013750DomainGHMP kinase, C-terminal domainInterproscan
IPR001638DomainSolute-binding protein family 3/N-terminal domain of MltFInterproscan
IPR051455FamilyBacterial solute-binding protein 3Interproscan
IPR007210DomainABC-type glycine betaine transport system, substrate-binding domainInterproscan
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR002017RepeatSpectrin repeatInterproscan
IPR003347DomainJmjC domainInterproscan
IPR041667DomainCupin-like domain 8Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan
PTHR12661PETER PAN-RELATEDInterproscan
PTHR46600THAP DOMAIN-CONTAININGInterproscan
PTHR45703DYNEIN HEAVY CHAINInterproscan
PTHR32463L-FUCOSE KINASEInterproscan
PTHR30085AMINO ACID ABC TRANSPORTER PERMEASEInterproscan
PTHR12461HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0050684Biological Processregulation of mRNA processingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0000027Biological Processribosomal large subunit assemblyInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0030286Cellular Componentdynein complexInterproscan
GO:0045505Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0042352Biological ProcessGDP-L-fucose salvageInterproscan
GO:0050201Molecular Functionfucokinase activityInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0043190Cellular ComponentATP-binding cassette (ABC) transporter complexInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016706Molecular Function2-oxoglutarate-dependent dioxygenase activityInterproscan

TOP