Gene detail

Detailed information of g676.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031561998.1, trafficking protein particle complex subunit 2-like protein [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
A6H7F7	Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=9913 GN=TRAPPC2L PE=2 SV=1
B5FXJ6	Trafficking protein particle complex subunit 2-like protein OS=Taeniopygia guttata OX=59729 GN=TRAPPC2L PE=2 SV=1
Q9JME7	Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=10090 GN=Trappc2l PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Fork_head

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF01663	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan
PF04628	Sedlin_N	Sedlin, N-terminal conserved region	Family	Interproscan
PF13330	Mucin2_WxxW	Mucin-2 protein WxxW repeating region	Family	Interproscan
PF00250	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR017850	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR002591	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan
IPR007070	Family	GPI ethanolamine phosphate transferase 1	Interproscan
IPR052203	Family	GHMP Kinase-Related Enzymes	Interproscan
IPR006722	Family	Trafficking protein particle complex subunit 2	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR044760	Family	Trafficking protein particle complex subunit 2-like	Interproscan
IPR025155	Domain	WxxW domain	Interproscan
IPR000850	Family	Adenylate kinase/UMP-CMP kinase	Interproscan
IPR001766	Domain	Fork head domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR030456	Conserved_site	Fork head domain conserved site 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan
PTHR12250	PHOSPHATIDYLINOSITOL GLYCAN, CLASS N	Interproscan
PTHR32463	L-FUCOSE KINASE	Interproscan
PTHR12403	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2	Interproscan
PTHR23359	NUCLEOTIDE KINASE	Interproscan
PTHR45767	FORKHEAD BOX PROTEIN O	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006506	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0051377	Molecular Function	mannose-ethanolamine phosphotransferase activity	Interproscan
GO:0042352	Biological Process	GDP-L-fucose salvage	Interproscan
GO:0050201	Molecular Function	fucokinase activity	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0030008	Cellular Component	TRAPP complex	Interproscan
GO:0004017	Molecular Function	adenylate kinase activity	Interproscan
GO:0004127	Molecular Function	(d)CMP kinase activity	Interproscan
GO:0004550	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0006165	Biological Process	obsolete nucleoside diphosphate phosphorylation	Interproscan
GO:0019205	Molecular Function	nucleobase-containing compound kinase activity	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00939	adk, AK; adenylate kinase	EC:2.7.4.3	Exosome	ko04147	deepkoala