Detailed information of g678.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_028631890.1, phosphatidylcholine translocator ABCB4 isoform X2 [Grammomys surdaster]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P43245ATP-dependent translocase ABCB1 OS=Rattus norvegicus OX=10116 GN=Abcb1 PE=2 SV=1
P06795ATP-dependent translocase ABCB1 OS=Mus musculus OX=10090 GN=Abcb1b PE=1 SV=1
P21448ATP-dependent translocase ABCB1 OS=Cricetulus griseus OX=10029 GN=ABCB1 PE=1 SV=2
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04970LRATLecithin retinol acyltransferaseDomainInterproscan
PF00474SSFSodium:solute symporter familyFamilyInterproscan
PF00664ABC_membraneABC transporter transmembrane regionFamilyInterproscan
PF00005ABC_tranABC transporterDomainInterproscan
PF07691PA14PA14 domainDomainInterproscan
PF02709Glyco_transf_7CN-terminal domain of galactosyltransferaseFamilyInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF21056ZSWIM1-3_RNaseH-likeZinc finger SWIM domain-containing protein 1/3, RNaseH-like domainDomainInterproscan
PF13912zf-C2H2_6C2H2-type zinc fingerDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007053DomainLRAT domainInterproscan
IPR036640Homologous_superfamilyABC transporter type 1, transmembrane domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR038377Homologous_superfamilySodium/glucose symporter superfamilyInterproscan
IPR001734FamilySodium/solute symporterInterproscan
IPR011527DomainABC transporter type 1, transmembrane domainInterproscan
IPR039421FamilyType 1 protein exporterInterproscan
IPR017871Conserved_siteABC transporter-like, conserved siteInterproscan
IPR003439DomainABC transporter-like, ATP-binding domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR051227FamilyChondroitin sulfate glycosyltransferaseInterproscan
IPR029044Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR037524DomainPA14/GLEYA domainInterproscan
IPR011658DomainPA14 domainInterproscan
IPR027791DomainGalactosyltransferase, C-terminalInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR048324DomainZSWIM1/3, RNaseH-like domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR000998DomainMAM domainInterproscan
IPR052065FamilyComplement and asymmetry regulatorInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24222ABC TRANSPORTER B FAMILYInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR12369CHONDROITIN SYNTHASEInterproscan
PTHR24246OLFACTORY RECEPTOR AND ADENOSINE RECEPTORInterproscan
PTHR47456PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23226ZINC FINGER AND SCAN DOMAIN-CONTAININGInterproscan
PTHR22906PROPERDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0140359Molecular FunctionABC-type transporter activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0042626Molecular FunctionATPase-coupled transmembrane transporter activityInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0008376Molecular Functionacetylgalactosaminyltransferase activityInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09228KRAB; KRAB domain-containing zinc finger protein-CD moleculesko04090deepkoala
Transcription factorsko03000deepkoala

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