Gene detail

Detailed information of g6780.t2 in Acropora digitifera

Genomic Location: chr3Alt:22918765...22947169
NR annotation: XP_015769954.1, PREDICTED: zinc metalloproteinase-disintegrin-like berythractivase isoform X3 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6780.t2

ATGAACTTGTCTATGATATCTTTGCTAATCATGGTGGCTCAGCTGAACCTTTTTGGCAACACAGATTCGAAATTTTTGGATTGGAATAATTTCGAGCAGCAAATACGAAAATACGAAATTGTAGCTCCACGACTTCAAATTCAAGGCTTATGGAGGAGAGAAATATCAACAAGATCTAGCTTGGGTGATCATATCGACAAAGCGGTTTTCTTCTTTAGAGGATTTGGCAAGAATTTTGTTTTAGTTGTTGCACAGAATCGGGTATTGCTGTCTGCCAATTATGTGTCAAGATCTTTTTCAGCAGATGGCGCTGAAGTTATTTCAGGACACGAGAAAACTGATAATTGTTTCTACCAAGGGACTGTGCAGGGCTTACAACACTCTATTGTTGCCATTAGCACTTGCCATGGAATTGAGGGAATGGTGTATGATGGAAATGAGACATACTTTATCCAACCACTGCCAGGAAATACAGAGCAACATATTTTGTTCCGTTCAAAAGACATGGTGCAGGGAGAAAAACGATGTGGCGTCGATCATTTCAAAGTTGCCCTTGACATGGAAAAAGATATTTTTAATGGACAACATCGGGTAAGACGAAATGTAAAGAATGAAATAAAATATGTGGAATTGATCATTGTCAATGATCATAGCCAGTATTTAAAGCTAAGAAGCATTGCTGAAGTGGAGAAGCGATCAAAGAGTATAGCCAATGTAGTAGACTCTCTTTTTCGTCCCATTAACGTTCGTGTGGCGTTAATAATGGTTGAAACGTGGAATCAGCGTGATCGCATTGAAGTTGTTGAGGACTCCAACAAATGTTTGGACAATTTTATGGTTTACAGGAATGGAGACCTGTGGAAAAAACAAAAACACGACAATGCAATGCTTATAACGCATCGTTCCTTTAAAGGTTCAACCGTTGGTAAGGCTGCTTTAACGTCAATGTGTGGTCGCAAGTCGGGAGGAGTCGTGCAGGATCATGCCAAAAATGCCGCAGCTACCGCAGCAACAGTGGCTCATGAAATGGGACACAATTTTGGAATGCTTCACGACGAAGACATTGAAAGCTGCAAGTGCAATTCACCATCAGACAATCAAGGATGTATTATGTCTGCAGTAGCCAAGAATACACCTTCCACAGAATGGTCATCATGTAGCAGGGAGTCGTATAAAAAGTATTTAAACAGAGGAATGGATTCTTGTTTGTTCAATGTACCGCAATCTTTATTTGGAGATGCTGTCTGCGGTAATGGCTTCAAGGAAGAAGGCGAAGAGTGCGACTGTGGAAACGTCGAGGATTGTAAGAAGTACAGTGATGGTTGCTGCAATGCTACTACATGCAAACTTCATCCTGATTCTGAGTGTGATACAGGGGCTTGTTGTTCGAAATGTAAGCTTAAGCCTCAAGGTGTTGTTTGCCGAGAGAAGCTGAATGAATGTGATCTACCGGAATTTTGCACTGGTAAATCAGAATTGTGCCCTTCCAATAAGTACGTTCACAATGGAAGGTCATGCGCGAACAACAACGGATATTGCTACAACGGTGAATGCCCAACGCACGACAAACAATGCAAAGATTTGTGGGGCCATGAGGCAAAATCTGGTCCAGATGTGTGCTATAGCGTGAACGAGCACGGTACAGTGCGAGGAAATTGCCATCAACCTGGAAACAATGTTTATATCAAGTGCACTCGGCAGAACAGACTTTGTGGAATGCTTCAATGTACAAACATAGATAAGATTGAATTACCAATCATTGGCTCTGATAAAAGCAGTTACGCACACTCTTTCAGCGGCATCTTGTGCAAGAGCGCTTCTCTTTCTCTTGGTCGAGATGTCCCCGATCCGGGAATGACTGTGGAAGGAACGAAATGCGGAGAAAACAAGCTTTGTCTGGATCGAAAGTGTGTGAGCATAGAGAGCGTTACTACCACTGTCAAAAGATGTCCAAACAACTGCTCTAACGACAACGGGATTTGTAACAACGAAGGGGATTGTTTTTGCCTGAGTTGTTGGCAAGGTGCAGACTGCAGTCAGTGGGTTAATTGTGGACAGGAAGGTGGTAATGGTACAAATCAAACTTACGTAGTCACGCCTACAACAGCAAACAACACTGAAACCACAGTGGTTTTTCAAGGGTCTCGAGAAAGTTCGGGAACAGTGGCGGCTGTCGTTGTGGTGTGCATTTTGCTGTTGGTTGGAATTGCTCTTGGCGTCATTTATCGTAAAAGGTTGATGCAGAAATGGCGCGCTTGTCAGCTGAAAGCTCCTGGACCCAAACGGTATCAAGGTGTGCCTCATGGCTCTTCTGAACAAAATAATGAAAGAAGTAGGCCTGAAACTCGCAGTGACCTAGACGTAGAGGCTGCTAAAGCAAGGCCCAATATATCGGGACCGACACTCAACAGTACAACACGAAATGGCTCTGATCTTACTTTAAAACGCAATACCCTTAGTTCTACTAGTACTTCAAAAGAACCCGCCAAACAAGATAAGCCGGATAGAGAGCCTCTGATTGCTCTTAAACCAACGCCAAAAATACCCAATAAACAAGTTGAAGCAAAGTGGGAAACGAGCACAAAGTATCCTCCACCGAACCTTAGAACTCGAGAATGGCCCCGCAAGGATGAGAAAGATTCTTTGAATCGTGTATCTTCTCCAACAGAGATTAGTAAACCGGTTAATCCTATTAAACCATCTCGACCGAAAAGCCACGCGGGAATCTTGGATAAACCAGCTGTACCTCCTCCACCGTCAAGGAAAGAACCAGTCAAACCGCCTAAACCTCGACGACCAGAAAGCCTCGCGGGAGTGGTTGACAAACACGAACCGGCTAAACCTTTCAAGCCCCGTCGCCCAGAAAGTCATGCAGGTGTGATCGACAAACCGGAAGCTGGAAAACGTGCTAAACCTCGTCGACCCGAAAGCCATGCAGGAGTCCTGGACAAACCAGCTTCTCCCTCTTGGAAAAAGCCATTACCGCCGTCGGCTGCTGGTGAGAAGAAGTCAGAAATGACAGGTGCCAGTAATCCTCCAGCCAATCCACCCAAAGTTCCTGTTAGGCCGCCACTGAGGCCAGTTGAAGCTCGACTGCGGAGACAGTCATCAGAAGAAAGGCCAACTTCATTGCCCTTAAAACCATCTGACTTGAAAAAGGCCGGAGTTGCGACAGGAATGAAGAAACCGTCCTCCTTCTCAAAGGCCGATAAAAAGGTCGCCCTCAGACCACCTGGACCCATACCTCCGCGGCCTGGAACGAAACCGACATGA

Transcript

chr3Alt.g6780.t2

CAAGGAAGGCAATTGATTTATTAGAAATTACAAAGTGAAGATGAACTTGTCTATGATATCTTTGCTAATCATGGTGGCTCAGCTGAACCTTTTTGGCAACACAGATTCGAAATTTTTGGATTGGAATAATTTCGAGCAGCAAATACGAAAATACGAAATTGTAGCTCCACGACTTCAAATTCAAGGCTTATGGAGGAGAGAAATATCAACAAGATCTAGCTTGGGTGATCATATCGACAAAGCGGTTTTCTTCTTTAGAGGATTTGGCAAGAATTTTGTTTTAGTTGTTGCACAGAATCGGGTATTGCTGTCTGCCAATTATGTGTCAAGATCTTTTTCAGCAGATGGCGCTGAAGTTATTTCAGGACACGAGAAAACTGATAATTGTTTCTACCAAGGGACTGTGCAGGGCTTACAACACTCTATTGTTGCCATTAGCACTTGCCATGGAATTGAGGGAATGGTGTATGATGGAAATGAGACATACTTTATCCAACCACTGCCAGGAAATACAGAGCAACATATTTTGTTCCGTTCAAAAGACATGGTGCAGGGAGAAAAACGATGTGGCGTCGATCATTTCAAAGTTGCCCTTGACATGGAAAAAGATATTTTTAATGGACAACATCGGGTAAGACGAAATGTAAAGAATGAAATAAAATATGTGGAATTGATCATTGTCAATGATCATAGCCAGTATTTAAAGCTAAGAAGCATTGCTGAAGTGGAGAAGCGATCAAAGAGTATAGCCAATGTAGTAGACTCTCTTTTTCGTCCCATTAACGTTCGTGTGGCGTTAATAATGGTTGAAACGTGGAATCAGCGTGATCGCATTGAAGTTGTTGAGGACTCCAACAAATGTTTGGACAATTTTATGGTTTACAGGAATGGAGACCTGTGGAAAAAACAAAAACACGACAATGCAATGCTTATAACGCATCGTTCCTTTAAAGGTTCAACCGTTGGTAAGGCTGCTTTAACGTCAATGTGTGGTCGCAAGTCGGGAGGAGTCGTGCAGGATCATGCCAAAAATGCCGCAGCTACCGCAGCAACAGTGGCTCATGAAATGGGACACAATTTTGGAATGCTTCACGACGAAGACATTGAAAGCTGCAAGTGCAATTCACCATCAGACAATCAAGGATGTATTATGTCTGCAGTAGCCAAGAATACACCTTCCACAGAATGGTCATCATGTAGCAGGGAGTCGTATAAAAAGTATTTAAACAGAGGAATGGATTCTTGTTTGTTCAATGTACCGCAATCTTTATTTGGAGATGCTGTCTGCGGTAATGGCTTCAAGGAAGAAGGCGAAGAGTGCGACTGTGGAAACGTCGAGGATTGTAAGAAGTACAGTGATGGTTGCTGCAATGCTACTACATGCAAACTTCATCCTGATTCTGAGTGTGATACAGGGGCTTGTTGTTCGAAATGTAAGCTTAAGCCTCAAGGTGTTGTTTGCCGAGAGAAGCTGAATGAATGTGATCTACCGGAATTTTGCACTGGTAAATCAGAATTGTGCCCTTCCAATAAGTACGTTCACAATGGAAGGTCATGCGCGAACAACAACGGATATTGCTACAACGGTGAATGCCCAACGCACGACAAACAATGCAAAGATTTGTGGGGCCATGAGGCAAAATCTGGTCCAGATGTGTGCTATAGCGTGAACGAGCACGGTACAGTGCGAGGAAATTGCCATCAACCTGGAAACAATGTTTATATCAAGTGCACTCGGCAGAACAGACTTTGTGGAATGCTTCAATGTACAAACATAGATAAGATTGAATTACCAATCATTGGCTCTGATAAAAGCAGTTACGCACACTCTTTCAGCGGCATCTTGTGCAAGAGCGCTTCTCTTTCTCTTGGTCGAGATGTCCCCGATCCGGGAATGACTGTGGAAGGAACGAAATGCGGAGAAAACAAGCTTTGTCTGGATCGAAAGTGTGTGAGCATAGAGAGCGTTACTACCACTGTCAAAAGATGTCCAAACAACTGCTCTAACGACAACGGGATTTGTAACAACGAAGGGGATTGTTTTTGCCTGAGTTGTTGGCAAGGTGCAGACTGCAGTCAGTGGGTTAATTGTGGACAGGAAGGTGGTAATGGTACAAATCAAACTTACGTAGTCACGCCTACAACAGCAAACAACACTGAAACCACAGTGGTTTTTCAAGGGTCTCGAGAAAGTTCGGGAACAGTGGCGGCTGTCGTTGTGGTGTGCATTTTGCTGTTGGTTGGAATTGCTCTTGGCGTCATTTATCGTAAAAGGTTGATGCAGAAATGGCGCGCTTGTCAGCTGAAAGCTCCTGGACCCAAACGGTATCAAGGTGTGCCTCATGGCTCTTCTGAACAAAATAATGAAAGAAGTAGGCCTGAAACTCGCAGTGACCTAGACGTAGAGGCTGCTAAAGCAAGGCCCAATATATCGGGACCGACACTCAACAGTACAACACGAAATGGCTCTGATCTTACTTTAAAACGCAATACCCTTAGTTCTACTAGTACTTCAAAAGAACCCGCCAAACAAGATAAGCCGGATAGAGAGCCTCTGATTGCTCTTAAACCAACGCCAAAAATACCCAATAAACAAGTTGAAGCAAAGTGGGAAACGAGCACAAAGTATCCTCCACCGAACCTTAGAACTCGAGAATGGCCCCGCAAGGATGAGAAAGATTCTTTGAATCGTGTATCTTCTCCAACAGAGATTAGTAAACCGGTTAATCCTATTAAACCATCTCGACCGAAAAGCCACGCGGGAATCTTGGATAAACCAGCTGTACCTCCTCCACCGTCAAGGAAAGAACCAGTCAAACCGCCTAAACCTCGACGACCAGAAAGCCTCGCGGGAGTGGTTGACAAACACGAACCGGCTAAACCTTTCAAGCCCCGTCGCCCAGAAAGTCATGCAGGTGTGATCGACAAACCGGAAGCTGGAAAACGTGCTAAACCTCGTCGACCCGAAAGCCATGCAGGAGTCCTGGACAAACCAGCTTCTCCCTCTTGGAAAAAGCCATTACCGCCGTCGGCTGCTGGTGAGAAGAAGTCAGAAATGACAGGTGCCAGTAATCCTCCAGCCAATCCACCCAAAGTTCCTGTTAGGCCGCCACTGAGGCCAGTTGAAGCTCGACTGCGGAGACAGTCATCAGAAGAAAGGCCAACTTCATTGCCCTTAAAACCATCTGACTTGAAAAAGGCCGGAGTTGCGACAGGAATGAAGAAACCGTCCTCCTTCTCAAAGGCCGATAAAAAGGTCGCCCTCAGACCACCTGGACCCATACCTCCGCGGCCTGGAACGAAACCGACATGACGATGTCTCCACCCTTCTTAAAGTGCCAGTAAACCCCAAAATTTTTTCACACAAATAAACTTTTGCAACTGCCGTGACAACTTTGGCGAAAAAGTTTTTGACCCTTGGATTTTTCCTTCGGATGCTATGCAGCTAGGTCATATTGGTGTTAATTAATCTTAAAACAGGAAATTTTTTGATATTATTTAATTTGCAATGCGAAAAGTAGGCATCAGTTGTAATAGAAATAAAAATGTTTGTTTACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61824	Disintegrin and metalloproteinase domain-containing protein 12 OS=Mus musculus OX=10090 GN=Adam12 PE=1 SV=2
O43184	Disintegrin and metalloproteinase domain-containing protein 12 OS=Homo sapiens OX=9606 GN=ADAM12 PE=1 SV=3
O35674	Disintegrin and metalloproteinase domain-containing protein 19 OS=Mus musculus OX=10090 GN=Adam19 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00200 all species →	Disintegrin	Disintegrin	Domain	Interproscan
PF08516 all species →	ADAM_CR	ADAM cysteine-rich	Family	Interproscan
PF01421 all species →	Reprolysin	Reprolysin (M12B) family zinc metalloprotease	Domain	Interproscan
PF01562 all species →	Pep_M12B_propep	Reprolysin family propeptide	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR001762 all species →	Domain	Disintegrin domain	Interproscan
IPR034027 all species →	Domain	Reprolysin domain, adamalysin-type	Interproscan
IPR036436 all species →	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR006586 all species →	Domain	ADAM, cysteine-rich domain	Interproscan
IPR002870 all species →	Domain	Peptidase M12B, propeptide	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018358 all species →	Conserved_site	Disintegrin, conserved site	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11905 all species →	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g6780.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6780.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.