Gene detail

Detailed information of g6822.t1 in Montipora capitata

Genomic Location: Sc0000150:369738...382996
NR annotation: CAH3181909.1, unnamed protein product [Porites evermanni]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6822.t1

atgaagacgtcggagcccagttctccattatcaccagaaatcatccagcccagaatgttcataaaggaaggacccgtgctactgtcatctgcaatggcctctcaagacaggtatctggttctctttgacgatattcttttagtggcaaaatcaagatcgccaacctctttgaagctaaaacaccgtgttcgcgtcagtgaattatggttggcaagttgtctggactatgcttttgatgacacgagaactgtggataaatcatttgtgattgggtggcctacgacaaactttgtcgcgtctttcaacaccaaggaggagaaggaagcctggcagatcgtgctgtctaaacagataaaagaacagaaggagttggaagaccccaaaagcttgaacctaaagatttacaacagagatatggaatcgccggattcatcaggctattccaaatctttctcggtatcaaacatggatgatgccgctactgtggttaaaatgtcgctgtcattgtttaacattcagagtgatgatgtgtccgagtatcaattgtgggtgctttctggtaaagaggaaggtgcatatccattgataggtcacgagtttcctttcgcgataaaaatgaaccacgtgcgagaggcagccatgactgacgaggagggattcccttttcctttcgactttgaacagcaattgccagccatggatcccctgtcaccagaaacgcagtgtcagtttatactgaaaaggaacaggaaaatacccagactatcgattggtgatgtacccaacgctcctagtaaacagcgatggaaaaatccaataaagagatcgcagataatgaactgggcgatgatgcacaagaaacaatcaggatccacaaagtcccactccatggatggacagtcgtcaaccggaaagttgtttggattaccactgaaccagctatgttcagacgaagagccagtccctaaggccgtacaggagctgttgttacatctattccgatatggtcccaatacaactggaatctttaggaagtccgctaatgcaaggattgcgaaagaagttaagctggcgttggacaagggtaaaatagtagacttcgaggatgtttcggaaatcgtagcggcctcagtaatgaaggaatttctacgtcgtctgcccgactgcatctttgaaagcgagaattacgaagatcttatcgccactaacaacctgcaagatcgtgaggaacgcgtgcggcaattaaagggaattttgaagggagtcaacccttacaattacgaacttttgaagtgctttatgtgtgtgttgtatcacattgctgataacgcggaaaccaacaacatgaacgcttataacctcgctgtgtgcgtggctcctagcttgctctgggcacccaagagttcaagtattcccccgacagaacagtctaactctgttcccccagtcatacagtttataatagaagaatgtgtggatataatgggggagagtgtcagaacagtgcttggcgaccgcagtgagatagcggctaaccacgtgttaagtgactcagaaagcggtacgcaagactcacggactgcggactctacggatgacggaatagaatcaccggaacctcttagtccaaagggagaaagaaactctatgcatctaagtgactcgaacttatatgtaccgagcactctggctgttaatccacccaacagaagtgctagcactcctaactctccctgtgattcagggattccttctccaagctcgtctccgacacttaagagacttgatgtcgagttttcaaatcaactaagcgcggcattttatgaacccggaaaaagtaaaggacattcatcggttggtcgtcgaagttcggaacctctgggactaccgccggattccctaaaattacgactcaagggtaataggaaacttccgaactacagaagacagctaagtagtacaactacaagtgctgagcttattgaacacaaagagactccaaaaacaacggccagtggacgcaaactagagactgctgtcctgcgccgggcgcattctcctcaaactgtgcgtctttttcccgtcacgcaagatgtcacgcaatatcagcgtctgaatcctatacctggttaccaaggcccttctgctcgtgctcttgaagttaactcatgcgttcagactcggggatcgagtactgacactcatgaggataatcttacgttacaaccacgtcccagttcaccggtttcaaaacaaatcccaggggttcctcgttctccttccccaagccctgatcaagtgtttcaagcggtggatcgccgccggcagcctgcagctccatcttatcaggaacacatgcagcgcagaagagaatttacttcgaaacctgcgttgttttcaggttcggaagggaaggaaacaaaagatgtggaaaaggaacaggggtctcccaaggaagttggggcattagtcgaatcgaaacatgtgcagcatgcaccaatatctagcaaatctgctgctttgagcgaaaaatttgattccgaaaggagcgaaacgtcctcgggacccaggacccctttgactccgacaagtcagcacgaatatgtctgggagcaagagggtgattctagtacgagttcagtcacggcaagctctggactgcgcaagctcgaacattctccgtttggactcaaccttcatcacaaaagacacgctagtgaaggatcaggtaaaaagcaaacgacggaaaactccaagaaaccagttagtatacacccgagttcttctaccggacagttacgtgtgtgtcctacttccgtttcgacagccataaattctaattctcagaattcctcattgacgcattttcctcactcggagatatttccgcacgaagctcaaacgaaaactcactggatttcttccgccgagactcgggtaacctcggcggctcctaactcgaactcgcacggtgctttccgacttcgggcaggcagcgccacctcgtcttcgtcatcagtgtcgagtttggacgaacgatcaagcatcggcaacgactcgacgttttccgagagtaaaacggacatgacacagattcgtgacataaaagaacttctttgtgaaacaactcaggcaaatggactgaaaatcagtccccaaacagcacaagccattgccaaagttcgcactccttattcacacagtggaccctacacggtcccttcacatcacgacatggaaaaaatactgtcaacagaagaatcgtacgtttag

Transcript

g6822.t1

ATGAAGACGTCGGAGCCCAGTTCTCCATTATCACCAGAAATCATCCAGCCCAGAATGTTCATAAAGGAAGGACCCGTGCTACTGTCATCTGCAATGGCCTCTCAAGACAGGTATCTGGTTCTCTTTGACGATATTCTTTTAGTGGCAAAATCAAGATCGCCAACCTCTTTGAAGCTAAAACACCGTGTTCGCGTCAGTGAATTATGGTTGGCAAGTTGTCTGGACTATGCTTTTGATGACACGAGAACTGTGGATAAATCATTTGTGATTGGGTGGCCTACGACAAACTTTGTCGCGTCTTTCAACACCAAGGAGGAGAAGGAAGCCTGGCAGATCGTGCTGTCTAAACAGATAAAAGAACAGAAGGAGTTGGAAGACCCCAAAAGCTTGAACCTAAAGATTTACAACAGAGATATGGAATCGCCGGATTCATCAGGCTATTCCAAATCTTTCTCGGTATCAAACATGGATGATGCCGCTACTGTGGTTAAAATGTCGCTGTCATTGTTTAACATTCAGAGTGATGATGTGTCCGAGTATCAATTGTGGGTGCTTTCTGGTAAAGAGGAAGGTGCATATCCATTGATAGGTCACGAGTTTCCTTTCGCGATAAAAATGAACCACGTGCGAGAGGCAGCCATGACTGACGAGGAGGGATTCCCTTTTCCTTTCGACTTTGAACAGCAATTGCCAGCCATGGATCCCCTGTCACCAGAAACGCAGTGTCAGTTTATACTGAAAAGGAACAGGAAAATACCCAGACTATCGATTGGTGatgtaCCCAACGCTCCTAGTAAACAGCGATGGAAAAATCCAATAAAGAGATCGCAGATAATGAACTGGGCGATGATGCACAAGAAACAATCAGGATCCACAAAGTCCCACTCCATGGATGGACAGTCGTCAACCGGAAAGTTGTTTGGATTACCACTGAACCAGCTATGTTCAGACGAAGAGCCAGTCCCTAAGGCCGTACAGGAGCTGTTGTTACATCTATTCCGATATGGTCCCAATACAACTGGAATCTTTAGGAAGTCCGCTAATGCAAGGATTGCGAAAGAAGTTAAGCTGGCGTTGGACAAGGGTAAAATAGTAGACTTCGAGGATGTTTCGGAAATCGTAGCGGCCTCAGTAATGaagGAATTTCTACGTCGTCTGCCCGACTGCATCTTTGAAAGCGAGAATTACGAAGATCTTATCGCCACTAACAACCTGCAAGATCGTGAGGAACGCGTGCGGCAATTAAAGGGAATTTTGAAGGGAGTCAACCCTTACAATTACGAACTTTTGAAGTGCTTTATGTGTGTGTTGTATCACATTGCTGATAACGCGGAAACCAACAACATGAACGCTTATAACCTCGCTGTGTGCGTGGCTCCTAGCTTGCTCTGGGCACCCAAGAGTTCAAGTATTCCCCCGACAGAACAGTCTAACTCTGTTCCCCCAGTCATACAGTTTATAATAGAAGAATGTGTGGATATAATGGGGGAGAGTGTCAGAACAGTGCTTGGCGACCGCAGTGAGATAGCGGCTAACCACGTGTTAAGTGACTCAGAAAGCGGTACGCAAGACTCACGGACTGCGGACTCTACGGATGACGGAATAGAATCACCGGAACCTCTTAGTCCAAAGGGAGAAAGAAACTCTATGCATCTAAGTGACTCGAACTTATATGTACCGAGCACTCTGGCTGTTAATCCACCCAACAGAAGTGCTAGCACTCCTAACTCTCCCTGTGATTCAGGGATTCCTTCTCCAAGCTCGTCTCCGACACTTAAGAGACTTGATGTCGAGTTTTCAAATCAACTAAGCGCGGCATTTTATGAACCCGGAAAAAGTAAAGGACATTCATCGGTTGGTCGTCGAAGTTCGGAACCTCTGGGACTACCGCCGGATTCCCTAAAATTACGACTCAAGGGTAATAGGAAACTTCCGAACTACAGAAGACAGCTAAGTAGTACAACTACAAGTGCTGAGCTTATTGAACACAAAGAGACTCCAAAAACAACGGCCAGTGGACGCAAACTAGAGACTGCTGTCCTGCGCCGGGCGCATTCTCCTCAAACTGTGCGTCTTTTTCCCGTCACGCAAGATGTCACGCAATATCAGCGTCTGAATCCTATACCTGGTTACCAAGGCCCTTCTGCTCGTGCTCTTGAAGTTAACTCATGCGTTCAGACTCGGGGATCGAGTACTGACACTCATGAGGATAATCTTACGTTACAACCACGTCCCAGTTCACCGGTTTCAAAACAAATCCCAGGGGTTCCTCGTTCTCCTTCCCCAAGCCCTGATCAAGTGTTTCAAGCGGTGGATCGCCGCCGGCAGCCTGCAGCTCCATCTTATCAGGAACACATGCAGCGCAGAAGAGAATTTACTTCGAAACCTGCGTTGTTTTCAGGTTCGGAAGGGAAGGAAACAAAAGATGTGGAAAAGGAACAGGGGTCTCCCAAGGAAGTTGGGGCATTAGTCGAATCGAAACATGTGCAGCATGCACCAATATCTAGCAAATCTGCTGCTTTGAGCGAAAAATTTGATTCCGAAAGGAGCGAAACGTCCTCGGGACCCAGGACCCCTTTGACTCCGACAAGTCAGCACGAATATGTCTGGGAGCAAGAGGGTGATTCTAGTACGAGTTCAGTCACGGCAAGCTCTGGACTGCGCAAGCTCGAACATTCTCCGTTTGGACTCAACCTTCATCACAAAAGACACGCTAGTGAAGGATCAGGTAAAAAGCAAACGACGGAAAACTCCAAGAAACCAGTTAGTATACACCCGAGTTCTTCTACCGGACAGTTACGTGTGTGTCCTACTTCCGTTTCGACAGCCATAAATTCTAATTCTCAGAATTCCTCATTGACGCATTTTCCTCACTCGGAGATATTTCCGCACGAAGCTCAAACGAAAACTCACTGGATTTCTTCCGCCGAGACTCGGGTAACCTCGGCGGCTCCTAACTCGAACTCGCACGGTGCTTTCCGACTTCGGGCAGGCAGCGCCACCTCGTCTTCGTCATCAGTGTCGAGTTTGGACGAACGATCAAGCATCGGCAACGACTCGACGTTTTCCGAGAGTAAAACGGACATGACACAGATTCGTGACATAAAAGAACTTCTTTGTGAAACAACTCAGGCAAATGGACTGAAAATCAGTCCCCAAACAGCACAAGCCATTGCCAAAGTTCGCACTCCTTATTCACACAGTGGACCCTACACGGTCCCTTCACATCACGACATGGAAAAAATACTGTCAACAGAAGAATCGTACGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2F6	Rho GTPase-activating protein 20 OS=Homo sapiens OX=9606 GN=ARHGAP20 PE=1 SV=2
Q6REY9	Rho GTPase-activating protein 20 OS=Rattus norvegicus OX=10116 GN=Arhgap20 PE=1 SV=2
Q6IFT4	Rho GTPase-activating protein 20 OS=Mus musculus OX=10090 GN=Arhgap20 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR047887 all species →	Domain	ARHGAP20, PH domain	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR047888 all species →	Domain	ARHGAP20, Ras-associating domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23179 all species →	T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20641	ARHGAP20; Rho GTPase-activating protein 20	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6822.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

3Conditions

46.7Max TPM

12.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	20	13.05	46.65
whole organisms · low pH treatment	15	15	11.17	32.12
whole organisms · extra low pH treatment pH treatment	12	12	14.21	41.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	46.65
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	41.99
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	35.46
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	17.51
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	17.08
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	14.94
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	12.67
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	12.53
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	11.67
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	9.45
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	9.30
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	8.48
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	7.92
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	6.41
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	4.76
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	4.65
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.82
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.76
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.65
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.22
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	32.12
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	31.22
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	28.49
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	15.56
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	12.59
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	9.38
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	8.86
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	7.31
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	6.75
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	5.53
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	3.00
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.84
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.66
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.64
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.58
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	41.59
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	35.76
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	35.20
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	11.66
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	11.35
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	9.17
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	8.80
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	5.77
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	3.84
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.73
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.69
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.93

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.