Gene detail

Detailed information of g684.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027038614.1, THO complex subunit 7 homolog [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
A7RX34	THO complex subunit 7 homolog OS=Nematostella vectensis OX=45351 GN=thoc7 PE=3 SV=1
Q6P643	THO complex subunit 7 homolog OS=Xenopus tropicalis OX=8364 GN=thoc7 PE=2 SV=1
Q7SZ78	THO complex subunit 7 homolog OS=Xenopus laevis OX=8355 GN=thoc7 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Fork_head

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF08075	NOPS	NOPS (NUC059) domain	Domain	Interproscan
PF05615	THOC7	Tho complex subunit 7	Family	Interproscan
PF00250	Forkhead	Forkhead domain	Domain	Interproscan
PF10168	Nup88	Nuclear pore component	Repeat	Interproscan
PF02816	Alpha_kinase	Alpha-kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012975	Domain	NOPS	Interproscan
IPR008501	Family	THO complex subunit 7/Mft1	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001766	Domain	Fork head domain	Interproscan
IPR018122	Conserved_site	Fork head domain conserved site1	Interproscan
IPR030456	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR047515	Domain	Forkhead box protein L2, forkhead domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR050211	Family	Forkhead box domain-containing protein	Interproscan
IPR019321	Family	Nucleoporin Nup88	Interproscan
IPR037700	Family	Nucleoporin NUP88/NUP82	Interproscan
IPR004166	Domain	Alpha-type protein kinase, alpha-kinase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR051852	Family	Alpha-type Protein Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan
PTHR23405	MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED	Interproscan
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR11829	FORKHEAD BOX PROTEIN	Interproscan
PTHR13257	NUCLEOPORIN NUP84-RELATED	Interproscan
PTHR45992	EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000445	Cellular Component	THO complex part of transcription export complex	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0000055	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0031037	Biological Process	myosin II filament disassembly	Interproscan
GO:1903013	Biological Process	response to differentiation-inducing factor 1	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13219	SFPQ, PSF; splicing factor, proline- and glutamine-rich	-	Spliceosome	ko03041	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala
			Transcription factors	ko03000	deepkoala
			Transporters	ko02000	deepkoala
			Spliceosome	ko03041	deepkoala