Gene detail

Detailed information of g685.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047145106.1, centromere protein F [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9UP83	Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens OX=9606 GN=COG5 PE=1 SV=4
Q8C0L8	Conserved oligomeric Golgi complex subunit 5 OS=Mus musculus OX=10090 GN=Cog5 PE=1 SV=3
Q9C9V9	Conserved oligomeric Golgi complex subunit 5 OS=Arabidopsis thaliana OX=3702 GN=COG5 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	ZBTB
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB
Transcription Factors Family	zf-BED

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20649	COG5_C	Conserved oligomeric Golgi complex subunit 5, C-terminal	Repeat	Interproscan
PF10392	COG5_N	Conserved oligomeric Golgi complex subunit 5, N-terminal	Repeat	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF02892	zf-BED	BED zinc finger	Domain	Interproscan
PF00037	Fer4	4Fe-4S binding domain	Domain	Interproscan
PF04068	RLI	Possible Fer4-like domain in RNase L inhibitor, RLI	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13964	Kelch_6	Kelch motif	Repeat	Interproscan
PF07707	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF00651	BTB	BTB/POZ domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048485	Domain	Conserved oligomeric Golgi complex subunit 5, helical domain	Interproscan
IPR049176	Domain	Conserved oligomeric Golgi complex subunit 5, N-terminal	Interproscan
IPR019465	Family	Conserved oligomeric Golgi complex subunit 5	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR052717	Family	Vacuolar processing and transposase activity regulators	Interproscan
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR013283	Family	RLI1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017896	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR007209	Domain	RNase L inhibitor RLI-like, possible metal-binding domain	Interproscan
IPR017900	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR017096	Family	BTB-kelch protein	Interproscan
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR011043	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan
IPR011705	Domain	BTB/Kelch-associated	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13228	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5	Interproscan
PTHR46599	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46169	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan
PTHR19248	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR45632	LD33804P	Interproscan
PTHR23159	CENTROSOMAL PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119	Cellular Component	Golgi transport complex	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000054	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0006415	Biological Process	translational termination	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16770	CNTRL; centriolin	-	Chromosome and associated proteins	ko03036	deepkoala