Gene detail

Detailed information of g6858.t1 in Acropora digitifera

Genomic Location: chr3Alt:23868681...23879539
NR annotation: XP_029212833.2, aldehyde dehydrogenase family 16 member A1-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6858.t1

ATGGCTTCTGTGCACACAGAAACTGAGACCTCGATGGCAGAAAAATCAGTCGGTCCAGCAAAAATTAAAAAGAATCCCGCTATCGCGCAGATCTTTGAAAGTTTAGAGTATAGTCCGGCACCAGAGGCTGCAAACAGCGTGAACTCATGGCTGCAAGAACATGGAAGGGACTTCGGACATTTTGTTAACGGCAAATGGCTGAAACCAAAGGGAAGGAAAATTTATGAATCAAGAAATCCAGCTACAGGGGAGACACTGGCCTCTACATTGCAAGGAGAGCAAGAGGACATAGATAATGCAGTTTCTGCTGCAAGAGAAGCTTTTAAATCATGGAGTAAACTCCCTGGCCATATACGAGCGCGCTATTTGTACAGTATAGCTCGGCATGTTCAAAAGCATGCTCGTCTAATTGCTGTGCTCGAAAGTATGGACAATGGCAAGCCAATCAGAGAAACTCGAGACGCTGATGTACAGATTGTTGTGAGACACTTGTATCACCATGCTGGTTGGGCACAACTGATGGATACTGAAATGAGAGATTGGAAGCCTGTAGGAGTTGTTGGTGCCATTGTTCCTTGGAATTTCCCGTTAATGTTACTGTGCTGGAAGGTGTGTCCTGCCCTTGCTATGGGAAACACAGTGGTTCTTAAGCCAGCAACATACACTAGACTGACTGCACTGCTGTTTGCTGAGATCTGTGCAGAGGCAGGGCTCCCACCTGGTGTTTTTAATGTAGTAACTGGCAATGGTGCATTTGGCAGCTCCCTTGCTGCCCATCCTGATGTTGACAAAGTGGCTTTTACTGGTTCTACTGAGGTAGGGAAAGTACTGCGCAGATTGACTGCTGGAAGTGGAAAGAAGCTTTCGTTGGAACTTGGTGGAAAATCCCCTGTTGTTGTGTTTGATTCAGCTGATTTGGACAGTGCAGTGGAGGGGATTGTGGATGCTATTTGGTTTAATCAGGGACAGGTTTGTAGTGCTGGATCACGTTTGATTGTTCAAGAGACCTGTGCTAAGCGCTTGATTGACAAGATCAAAGAACGTATGACTCACCTTCGACTTGGTCACTGCCTTGACAAGAGCATAGACATGGGGGCAATAGTTGACCCATCACACAAAAAGGCCATTGCAGCTTATGTTGAAGAGGCAAAGAGGCAGGGAGCTGAAGTGTTTCAAAGCTGTGCATCAATGCCGGAAGATGGATCATACTACCCACCTACCTTGATTACCAATGTTCAGCCAGTGTCCAAGATTGTGATGGAGGAGGTATTTGGTCCAGTTCTGACAGTTCTCCCATTCAGAACAGCCAAGGAAGGGATTGCTTTGGCCAACAATACTAATTATGGCCTTGCTGGAAGTGTATGGACAGAAAATTTATCACTTGCCTTAGAGGTTGCTATGAGTATCAAAGCTGGATCAGTTTGGGTTAATGGACATAACCTGTTTGATGCTGCAGCTGGATTTGGAGGCTACCGTGAGAGTGGATTTGGACGAGACGGTGGAAAAGAGGGTTTGTATGAGTATGTCTGCCCATCCTGGCAAGCACGACCTAGGCCATCTGTGGAGGATTATGATGTGACGGCGTTTGGTTCTTCGGTTCCTGCAGTAGTGCGAAATCCAAGTACCAGTCCTGTAAAAGCTCCAGACTGTAAAAGCGGAGAAACAGGCGGAGTTAAGCCACCAAGCATTGATCGCACCTACAAAGTCTACATTGGAGGGAATCAGAAGAGGCCAGATGGAAACTACTCTCGGCCAGTCTTGAACCCCAGTGGGGAGGTGATAGGACAAGTGGCTGAGGGAAACAGGAAGGACATCCGAGATGCTGTAGAGGCCGCACATAAAGCTGCACCAGGCTGGGGGAAAAGAGCTGCACACAATCGGGCTCAGATCGTGTACTATATGGCAGAGAACTTAGAGTTACGACACAGCGAGTTTAGCGAGCGACTTTGTAACATGACAGGTTGTTCCATACAAGAGGCCAACAAAGAAGTGGACATGACAATTCAGCGCTTGTTTTACTGGGGTGCGTATGCAGATAAATATGGAGGAACCGTGCAGGAAACTCCATTCTACGGTGCCACCGTCAAAATCCATGAGCCAGTTGGAGTGATTGGCATTGCTTGTCCCGATGGATGTCCGTTAGTGGCATTTATATCTCTGTTAGCACCTGCTGTCATAAGAGGCAACACTGTAGTTATTATTCCAAGTCAGAGTCATCCAATGGTGGCGGTTGACATGTACCAGATCTTTGACACATCTGACTTACCTGGCGGTGTTGTTAACATCGTCACGGGTGACAGAGATCACTTGACCAAATACCTGACGGAGCACCAAGATGTGCAAGCCATGTGGTACTTTGGCTCCGCGGAGGGGAGCAAATTTGTGGAGTGGTCCTCCGCAGTGAACGTTAAACGCACTTTTGTGAACTACGGTCAGAGTCGAGACTGGTTTGACAACGCGCAGGGACATGGGGAAGAGTTTCTGCTTCATTCAACTGAGTGCAAGAACATTTGGCTTCCAATGGGAGACATCTTTGCAAATTAA

Transcript

chr3Alt.g6858.t1

ATCCCCGTCTGCTTCATATATGAGTCCCCCTCCCTGGTGAAATAGGTACCAGATTCCTCGTGCGTTGTGGCTCTGTGTCTTCCACTTGAACACGCGAATTCCTAAATGGCTTCTGTGCACACAGAAACTGAGACCTCGATGGCAGAAAAATCAGTCGGTCCAGCAAAAATTAAAAAGAATCCCGCTATCGCGCAGATCTTTGAAAGTTTAGAGTATAGTCCGGCACCAGAGGCTGCAAACAGCGTGAACTCATGGCTGCAAGAACATGGAAGGGACTTCGGACATTTTGTTAACGGCAAATGGCTGAAACCAAAGGGAAGGAAAATTTATGAATCAAGAAATCCAGCTACAGGGGAGACACTGGCCTCTACATTGCAAGGAGAGCAAGAGGACATAGATAATGCAGTTTCTGCTGCAAGAGAAGCTTTTAAATCATGGAGTAAACTCCCTGGCCATATACGAGCGCGCTATTTGTACAGTATAGCTCGGCATGTTCAAAAGCATGCTCGTCTAATTGCTGTGCTCGAAAGTATGGACAATGGCAAGCCAATCAGAGAAACTCGAGACGCTGATGTACAGATTGTTGTGAGACACTTGTATCACCATGCTGGTTGGGCACAACTGATGGATACTGAAATGAGAGATTGGAAGCCTGTAGGAGTTGTTGGTGCCATTGTTCCTTGGAATTTCCCGTTAATGTTACTGTGCTGGAAGGTGTGTCCTGCCCTTGCTATGGGAAACACAGTGGTTCTTAAGCCAGCAACATACACTAGACTGACTGCACTGCTGTTTGCTGAGATCTGTGCAGAGGCAGGGCTCCCACCTGGTGTTTTTAATGTAGTAACTGGCAATGGTGCATTTGGCAGCTCCCTTGCTGCCCATCCTGATGTTGACAAAGTGGCTTTTACTGGTTCTACTGAGGTAGGGAAAGTACTGCGCAGATTGACTGCTGGAAGTGGAAAGAAGCTTTCGTTGGAACTTGGTGGAAAATCCCCTGTTGTTGTGTTTGATTCAGCTGATTTGGACAGTGCAGTGGAGGGGATTGTGGATGCTATTTGGTTTAATCAGGGACAGGTTTGTAGTGCTGGATCACGTTTGATTGTTCAAGAGACCTGTGCTAAGCGCTTGATTGACAAGATCAAAGAACGTATGACTCACCTTCGACTTGGTCACTGCCTTGACAAGAGCATAGACATGGGGGCAATAGTTGACCCATCACACAAAAAGGCCATTGCAGCTTATGTTGAAGAGGCAAAGAGGCAGGGAGCTGAAGTGTTTCAAAGCTGTGCATCAATGCCGGAAGATGGATCATACTACCCACCTACCTTGATTACCAATGTTCAGCCAGTGTCCAAGATTGTGATGGAGGAGGTATTTGGTCCAGTTCTGACAGTTCTCCCATTCAGAACAGCCAAGGAAGGGATTGCTTTGGCCAACAATACTAATTATGGCCTTGCTGGAAGTGTATGGACAGAAAATTTATCACTTGCCTTAGAGGTTGCTATGAGTATCAAAGCTGGATCAGTTTGGGTTAATGGACATAACCTGTTTGATGCTGCAGCTGGATTTGGAGGCTACCGTGAGAGTGGATTTGGACGAGACGGTGGAAAAGAGGGTTTGTATGAGTATGTCTGCCCATCCTGGCAAGCACGACCTAGGCCATCTGTGGAGGATTATGATGTGACGGCGTTTGGTTCTTCGGTTCCTGCAGTAGTGCGAAATCCAAGTACCAGTCCTGTAAAAGCTCCAGACTGTAAAAGCGGAGAAACAGGCGGAGTTAAGCCACCAAGCATTGATCGCACCTACAAAGTCTACATTGGAGGGAATCAGAAGAGGCCAGATGGAAACTACTCTCGGCCAGTCTTGAACCCCAGTGGGGAGGTGATAGGACAAGTGGCTGAGGGAAACAGGAAGGACATCCGAGATGCTGTAGAGGCCGCACATAAAGCTGCACCAGGCTGGGGGAAAAGAGCTGCACACAATCGGGCTCAGATCGTGTACTATATGGCAGAGAACTTAGAGTTACGACACAGCGAGTTTAGCGAGCGACTTTGTAACATGACAGGTTGTTCCATACAAGAGGCCAACAAAGAAGTGGACATGACAATTCAGCGCTTGTTTTACTGGGGTGCGTATGCAGATAAATATGGAGGAACCGTGCAGGAAACTCCATTCTACGGTGCCACCGTCAAAATCCATGAGCCAGTTGGAGTGATTGGCATTGCTTGTCCCGATGGATGTCCGTTAGTGGCATTTATATCTCTGTTAGCACCTGCTGTCATAAGAGGCAACACTGTAGTTATTATTCCAAGTCAGAGTCATCCAATGGTGGCGGTTGACATGTACCAGATCTTTGACACATCTGACTTACCTGGCGGTGTTGTTAACATCGTCACGGGTGACAGAGATCACTTGACCAAATACCTGACGGAGCACCAAGATGTGCAAGCCATGTGGTACTTTGGCTCCGCGGAGGGGAGCAAATTTGTGGAGTGGTCCTCCGCAGTGAACGTTAAACGCACTTTTGTGAACTACGGTCAGAGTCGAGACTGGTTTGACAACGCGCAGGGACATGGGGAAGAGTTTCTGCTTCATTCAACTGAGTGCAAGAACATTTGGCTTCCAATGGGAGACATCTTTGCAAATTAATGCTGAAGGTACAAATAAGGGTCCATGGCTAGCGGTTCGTCTATTACTGAGGGAAGGGGGGTTAAGAATTTACCCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q571I9	Aldehyde dehydrogenase family 16 member A1 OS=Mus musculus OX=10090 GN=Aldh16a1 PE=1 SV=2
A6QR56	Aldehyde dehydrogenase family 16 member A1 OS=Bos taurus OX=9913 GN=ALDH16A1 PE=2 SV=1
Q3T1L0	Aldehyde dehydrogenase family 16 member A1 OS=Rattus norvegicus OX=10116 GN=Aldh16a1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR029510 all species →	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11699 all species →	ALDEHYDE DEHYDROGENASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00128	ALDH; aldehyde dehydrogenase (NAD+)	EC:1.2.1.3	Alcoholic liver disease	ko04936	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.