Gene detail

Detailed information of g686.t1 in Acropora digitifera

Genomic Location: chr1Alt:10175499...10178893
NR annotation: XP_031568470.1, intraflagellar transport protein 57 homolog [Actinia tenebrosa]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28HX4	Intraflagellar transport protein 57 homolog OS=Xenopus tropicalis OX=8364 GN=ift57 PE=2 SV=1
A9ULY7	Intraflagellar transport protein 57 homolog OS=Xenopus laevis OX=8355 GN=ift57 PE=2 SV=2
Q9NWB7	Intraflagellar transport protein 57 homolog OS=Homo sapiens OX=9606 GN=IFT57 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10498 all species →	IFT57	Intra-flagellar transport protein 57	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019530 all species →	Family	Intra-flagellar transport protein 57	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16011 all species →	IFT57/HIPPI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030992 all species →	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g686.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g686.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

86.7Max TPM

37.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	36.96	86.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	86.74
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	70.09
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	64.40
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	61.17
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	57.84
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	55.70
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	55.54
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	50.40
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	45.54
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	42.02
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	42.01
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	40.27
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	38.98
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	38.72
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	37.48
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	35.39
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	34.82
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	34.66
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	34.53
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	34.20
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	34.05
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	33.21
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	32.80
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	32.71
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	31.85
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	30.92
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	30.57
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	30.47
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	26.99
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	26.30
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	26.15
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	21.07
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	20.70
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	19.18
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	18.40
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	16.54
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	16.50
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	16.34
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	16.28

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.