Gene detail

Detailed information of g687.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_015760990.1, PREDICTED: YY1-associated factor 2-like isoform X2 [Acropora digitifera]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99LW6	YY1-associated factor 2 OS=Mus musculus OX=10090 GN=Yaf2 PE=1 SV=1
Q8IY57	YY1-associated factor 2 OS=Homo sapiens OX=9606 GN=YAF2 PE=1 SV=3
Q8N488	RING1 and YY1-binding protein OS=Homo sapiens OX=9606 GN=RYBP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000030 (this species only)
Orthogroup (gene family)	OG0000792 (this species only)
Orthogroup (gene family)	OG0000967 (this species only)
Orthogroup (gene family)	OG0001352 (this species only)
Orthogroup (gene family)	OG0001664 (this species only)
Orthogroup (gene family)	OG0002524 (this species only)
Orthogroup (gene family)	OG0003173 (this species only)
Orthogroup (gene family)	OG0006392 (this species only)
Orthogroup (gene family)	OG0006607 (this species only)
Orthogroup (gene family)	OG0011365 (this species only)
Orthogroup (gene family)	OG0013370 (this species only)
Orthogroup (gene family)	OG0031967 (this species only)
Orthogroup (gene family)	OG0057432 (this species only)
Orthogroup (gene family)	OG0059778 (this species only)
Transcription factor family	MYB · all TF in this species
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF01105 all species →	EMP24_GP25L	emp24/gp25L/p24 family/GOLD	Domain	Interproscan
PF04145 all species →	Ctr	Ctr copper transporter family	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF16188 all species →	Peptidase_M24_C	C-terminal region of peptidase_M24	Domain	Interproscan
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF17219 all species →	YAF2_RYBP	Yaf2/RYBP C-terminal binding motif	Motif	Interproscan
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan
PF04003 all species →	Utp12	Dip2/Utp12 Family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR051575 all species →	Family	Myb-like DNA-binding	Interproscan
IPR009038 all species →	Domain	GOLD domain	Interproscan
IPR015720 all species →	Family	Transmembrane emp24 domain-containing protein	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007274 all species →	Family	Ctr copper transporter	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR050422 all species →	Family	Xaa-Pro aminopeptidase P	Interproscan
IPR032416 all species →	Domain	Peptidase M24, C-terminal domain	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR033774 all species →	Conserved_site	Yaf2/RYBP C-terminal binding motif	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR039958 all species →	Family	RING1 and YY1-binding protein/YY1-associated factor 2	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR007148 all species →	Domain	Small-subunit processome, Utp12	Interproscan
IPR027145 all species →	Family	Periodic tryptophan protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46621 all species →	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	Interproscan
PTHR45615 all species →	MYOSIN HEAVY CHAIN, NON-MUSCLE	Interproscan
PTHR22811 all species →	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45912 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12483 all species →	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR43763 all species →	XAA-PRO AMINOPEPTIDASE 1	Interproscan
PTHR12920 all species →	RYBP AND YAF2-RELATED	Interproscan
PTHR19858 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006 all species →	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0019185 all species →	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796 all species →	Biological Process	snRNA transcription by RNA polymerase III	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005793 all species →	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0030134 all species →	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0005375 all species →	Molecular Function	copper ion transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0035434 all species →	Biological Process	copper ion transmembrane transport	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034388 all species →	Cellular Component	Pwp2p-containing subcomplex of 90S preribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08517	SEC22; vesicle transport protein SEC22	-	Membrane trafficking	ko04131	deepkoala
K11468	YAF2; YY1-associated factor 2	-	Chromosome and associated proteins	ko03036	deepkoala
K14686	SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1	-	Transporters	ko02000	deepkoala
K20352	TMED10, ERV25; p24 family protein delta-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.