Detailed information of g6871.t1 in Tripedalia maipoensis

Genomic Location: scaffold_3:34996286...35026722
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity|RBR · all ubiquitin genes in this species

 Pfam domain
No Pfam domain signature was detected for g6871.t1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR051628
all species →		FamilyLinear Ubiquitination-Associated E3 LigasesInterproscan
IPR002867
all species →		DomainIBR domainInterproscan
IPR047546
all species →		DomainE3 ubiquitin-protein ligase RNF216, Rcat domainInterproscan
IPR044066
all species →		DomainTRIAD supradomainInterproscan
IPR047544
all species →		DomainE3 ubiquitin-protein ligase RNF216, RING finger, HC subclassInterproscan
IPR047545
all species →		DomainE3 ubiquitin-protein ligase RNF216, BRcat domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22770
all species →		UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0071797
all species →		Cellular ComponentLUBAC complexInterproscan
GO:0097039
all species →		Biological Processprotein linear polyubiquitinationInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g6871.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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