Gene detail

Detailed information of g688.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_002154618.3, uncharacterized protein LOC100199404 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N0Z3	Spindle and centriole-associated protein 1 OS=Homo sapiens OX=9606 GN=SPICE1 PE=1 SV=1
Q5RBY6	Spindle and centriole-associated protein 1 OS=Pongo abelii OX=9601 GN=SPICE1 PE=2 SV=1
Q8C804	Spindle and centriole-associated protein 1 OS=Mus musculus OX=10090 GN=Spice1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001147 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001411 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002884 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002984 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004507 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004720 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005716 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006280 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007420 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009782 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015599 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0017798 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Alpha-Helix\|UBAN · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF15678 all species →	SPICE	Centriole duplication and mitotic chromosome congression	Family	Interproscan
PF08600 all species →	Rsm1	Rsm1-like	Domain	Interproscan
PF07967 all species →	zf-C3HC	C3HC zinc finger-like	Domain	Interproscan
PF03104 all species →	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan
PF05193 all species →	Peptidase_M16_C	Peptidase M16 inactive domain	Domain	Interproscan
PF10036 all species →	RLL	RNA transcription, translation and transport factor protein	Family	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF00333 all species →	Ribosomal_S5	Ribosomal protein S5, N-terminal domain	Domain	Interproscan
PF02889 all species →	Sec63	Sec63 Brl domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050938 all species →	Family	Collagen and Collagen-like Structural Proteins	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR031387 all species →	Family	Spindle and centriole-associated protein 1	Interproscan
IPR013909 all species →	Domain	Nuclear-interacting partner of ALK/Rsm1-like, C-terminal	Interproscan
IPR036589 all species →	Homologous_superfamily	Homocysteine-binding domain superfamily	Interproscan
IPR052238 all species →	Family	SCF(NIPA) complex component	Interproscan
IPR012935 all species →	Domain	Zinc finger, C3HC-like	Interproscan
IPR006133 all species →	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR029703 all species →	Family	DNA polymerase epsilon catalytic subunit	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR007863 all species →	Domain	Peptidase M16, C-terminal	Interproscan
IPR050626 all species →	Family	Peptidase M16	Interproscan
IPR011249 all species →	Homologous_superfamily	Metalloenzyme, LuxS/M16 peptidase-like	Interproscan
IPR019265 all species →	Family	RNA transcription, translation and transport factor protein	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051230 all species →	Family	Amyloid-beta A4 Precursor Protein-Binding	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000851 all species →	Family	Small ribosomal subunit protein uS5	Interproscan
IPR013810 all species →	Domain	Small ribosomal subunit protein uS5, N-terminal	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR004179 all species →	Domain	Sec63 domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37456 all species →	SI:CH211-266K2.1	Interproscan
PTHR31167 all species →	SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1	Interproscan
PTHR15835 all species →	NUCLEAR-INTERACTING PARTNER OF ALK	Interproscan
PTHR10670 all species →	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	Interproscan
PTHR43690 all species →	NARDILYSIN	Interproscan
PTHR15924 all species →	CLE	Interproscan
PTHR13318 all species →	UNCHARACTERIZED	Interproscan
PTHR12345 all species →	SYNTENIN RELATED	Interproscan
PTHR48277 all species →	MITOCHONDRIAL RIBOSOMAL PROTEIN S5	Interproscan
PTHR24075 all species →	SEC63 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0090307 all species →	Biological Process	mitotic spindle assembly	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0005819 all species →	Cellular Component	spindle	Interproscan
GO:0046599 all species →	Biological Process	regulation of centriole replication	Interproscan
GO:0051310 all species →	Biological Process	metaphase chromosome alignment	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006272 all species →	Biological Process	leading strand elongation	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006287 all species →	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0008622 all species →	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0045004 all species →	Biological Process	DNA replication proofreading	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0072669 all species →	Cellular Component	tRNA-splicing ligase complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0043197 all species →	Cellular Component	dendritic spine	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000388 all species →	Biological Process	spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15433	CGI99, CLE7, RLLM1; RLL motif containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →