Gene detail

Detailed information of g69.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBU2644008.1, hypothetical protein [bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F2K079	4-hydroxybenzoate brominase (decarboxylating) OS=Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) OX=717774 GN=bmp5 PE=1 SV=1
V4HM83	4-hydroxybenzoate brominase (decarboxylating) OS=Pseudoalteromonas luteoviolacea (strain 2ta16) OX=1353533 GN=bmp5 PE=1 SV=1
Q94BV5	Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana OX=3702 GN=At1g62600 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)
Orthogroup (gene family)	OG0000026 (this species only)
Orthogroup (gene family)	OG0000695 (this species only)
Orthogroup (gene family)	OG0001150 (this species only)
Orthogroup (gene family)	OG0001359 (this species only)
Orthogroup (gene family)	OG0003059 (this species only)
Orthogroup (gene family)	OG0004198 (this species only)
Orthogroup (gene family)	OG0005345 (this species only)
Orthogroup (gene family)	OG0005884 (this species only)
Orthogroup (gene family)	OG0009346 (this species only)
Orthogroup (gene family)	OG0024075 (this species only)
Orthogroup (gene family)	OG0059688 (this species only)
Orthogroup (gene family)	OG0170755 (this species only)
Orthogroup (gene family)	OG0174401 (this species only)
Orthogroup (gene family)	OG0174544 (this species only)
Transcription factor family	MYB · all TF in this species
Transcription factor family	TSC22 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF13456 all species →	RVT_3	Reverse transcriptase-like	Domain	Interproscan
PF02847 all species →	MA3	MA3 domain	Repeat	Interproscan
PF00743 all species →	FMO-like	Flavin-binding monooxygenase-like	Family	Interproscan
PF13688 all species →	Reprolysin_5	Metallo-peptidase family M12	Family	Interproscan
PF21299 all species →	ADAM10_Cys-rich	ADAM10, cysteine-rich domain	Domain	Interproscan
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF16186 all species →	Arm_3	Atypical Arm repeat	Repeat	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037830 all species →	Family	ZZ-type zinc finger-containing protein 3	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003891 all species →	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR039778 all species →	Family	Programmed cell death protein 4	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR000960 all species →	Family	Flavin monooxygenase FMO	Interproscan
IPR020946 all species →	Family	Flavin monooxygenase-like	Interproscan
IPR050346 all species →	Family	Flavin-containing Monooxygenases	Interproscan
IPR001762 all species →	Domain	Disintegrin domain	Interproscan
IPR051489 all species →	Family	Disintegrin and Metalloproteinase Domain-Containing	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR049038 all species →	Domain	ADAM10, cysteine-rich domain	Interproscan
IPR036436 all species →	Homologous_superfamily	Disintegrin domain superfamily	Interproscan
IPR024931 all species →	Family	Importin subunit alpha	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR032413 all species →	Repeat	Atypical Arm repeat	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan
IPR004842 all species →	Family	SLC12A transporter family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22705 all species →	ZINC FINGER, ZZ DOMAIN CONTAINING 3	Interproscan
PTHR12626 all species →	PROGRAMMED CELL DEATH 4	Interproscan
PTHR23023 all species →	DIMETHYLANILINE MONOOXYGENASE	Interproscan
PTHR45702 all species →	ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER	Interproscan
PTHR23316 all species →	IMPORTIN ALPHA	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR46745 all species →	TSC22 DOMAIN FAMILY PROTEIN 1	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR11827 all species →	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0004499 all species →	Molecular Function	N,N-dimethylaniline monooxygenase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006509 all species →	Biological Process	membrane protein ectodomain proteolysis	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0008284 all species →	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0043066 all species →	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0006884 all species →	Biological Process	cell volume homeostasis	Interproscan
GO:0015377 all species →	Molecular Function	chloride:monoatomic cation symporter activity	Interproscan
GO:0015379 all species →	Molecular Function	potassium:chloride symporter activity	Interproscan
GO:0055064 all species →	Biological Process	chloride ion homeostasis	Interproscan
GO:0055075 all species →	Biological Process	potassium ion homeostasis	Interproscan
GO:1902476 all species →	Biological Process	chloride transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06704	ADAM10, CD156c; disintegrin and metalloproteinase domain-containing protein 10	EC:3.4.24.81	CD molecules	ko04090	deepkoala
K15042	KPNA5_6; importin subunit alpha-6/7	-	Chromosome and associated proteins	ko03036	deepkoala
K16865	PDCD4; programmed cell death protein 4	-	Proteoglycans in cancer	ko05205	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.