Detailed information of g6965.t2 in Acropora digitifera

Genomic Location: chr3Alt:25215399...25231650
NR annotation: XP_029197886.1, paired amphipathic helix protein Sin3a-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q60520Paired amphipathic helix protein Sin3a OS=Mus musculus OX=10090 GN=Sin3a PE=1 SV=3
Q96ST3Paired amphipathic helix protein Sin3a OS=Homo sapiens OX=9606 GN=SIN3A PE=1 SV=2
Q62141Paired amphipathic helix protein Sin3b OS=Mus musculus OX=10090 GN=Sin3b PE=1 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16879
all species →
Sin3a_CC-terminal domain of Sin3a proteinFamilyInterproscan
PF02671
all species →
PAHPaired amphipathic helix repeatRepeatInterproscan
PF08295
all species →
Sin3_corepressSin3 family co-repressorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039774
all species →
FamilyTranscriptional regulatory protein Sin3-likeInterproscan
IPR036600
all species →
Homologous_superfamilyPaired amphipathic helix superfamilyInterproscan
IPR003822
all species →
RepeatPaired amphipathic helixInterproscan
IPR031693
all species →
DomainSin3, C-terminalInterproscan
IPR013194
all species →
DomainHistone deacetylase interacting domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12346
all species →
SIN3B-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000118
all species →
Cellular Componenthistone deacetylase complexInterproscan
GO:0000122
all species →
Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0000785
all species →
Cellular ComponentchromatinInterproscan
GO:0003714
all species →
Molecular Functiontranscription corepressor activityInterproscan
GO:0016580
all species →
Cellular Componentobsolete Sin3 complexInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11644SIN3A; paired amphipathic helix protein Sin3a-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6965.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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