Detailed information of g697.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002157228.2, E3 ubiquitin-protein ligase SH3RF1 isoform X2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8TEJ3E3 ubiquitin-protein ligase SH3RF3 OS=Homo sapiens OX=9606 GN=SH3RF3 PE=1 SV=2
Q8C120E3 ubiquitin-protein ligase SH3RF3 OS=Mus musculus OX=10090 GN=Sh3rf3 PE=1 SV=2
Q6NRD3E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis OX=8355 GN=sh3rf1 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyUBD|Other|SH3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00018SH3_1SH3 domainDomainInterproscan
PF14604SH3_9Variant SH3 domainDomainInterproscan
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00168C2C2 domainDomainInterproscan
PF00989PASPAS foldDomainInterproscan
PF14598PAS_11PAS domainDomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF00053Laminin_EGFLaminin EGF domainDomainInterproscan
PF00055Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF08566Pam17Mitochondrial import protein Pam17FamilyInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR036423Homologous_superfamilySuperoxide dismutase-like, copper/zinc binding domain superfamilyInterproscan
IPR050384FamilyEndophilin/SH3RFInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR001452DomainSH3 domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008DomainC2 domainInterproscan
IPR051634FamilyExtended SynaptotagminInterproscan
IPR013767DomainPAS foldInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR035965Homologous_superfamilyPAS domain superfamilyInterproscan
IPR000014DomainPAS domainInterproscan
IPR001067FamilyNuclear translocatorInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR039902FamilyCoiled-coil domain-containing protein CCDC148/CCDC112Interproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR002049DomainLaminin-type EGF domainInterproscan
IPR000421DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR050440FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR008211DomainLaminin, N-terminalInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR013875FamilyMitochondrial import protein Pam17Interproscan
IPR052160FamilyGypsy Retrotransposon Integrase-likeInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14167SH3 DOMAIN-CONTAININGInterproscan
PTHR45761EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM CInterproscan
PTHR23043HYPOXIA-INDUCIBLE FACTOR 1 ALPHAInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR21549MUTATED IN BLADDER CANCER 1Interproscan
PTHR10574NETRIN/LAMININ-RELATEDInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR28021PRESEQUENCE TRANSLOCATED-ASSOCIATED MOTOR SUBUNIT PAM17, MITOCHONDRIALInterproscan
PTHR47266ENDONUCLEASE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006801Biological Processsuperoxide metabolic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005544Molecular Functioncalcium-dependent phospholipid bindingInterproscan
GO:0008429Molecular Functionphosphatidylethanolamine bindingInterproscan
GO:0031210Molecular Functionphosphatidylcholine bindingInterproscan
GO:0031227Cellular Componentobsolete intrinsic component of endoplasmic reticulum membraneInterproscan
GO:0031234Cellular Componentextrinsic component of cytoplasmic side of plasma membraneInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0009887Biological Processanimal organ morphogenesisInterproscan
GO:0009888Biological Processtissue developmentInterproscan
GO:0001405Cellular ComponentPAM complex, Tim23 associated import motorInterproscan
GO:0030150Biological Processprotein import into mitochondrial matrixInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17806PAM17, TIM23; mitochondrial import inner membrane translocase subunit TIM23-Ubiquitin systemko04121deepkoala
Mitochondrial biogenesisko03029deepkoala

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