Gene detail

Detailed information of g6972.t1 in Acropora digitifera

Genomic Location: chr3Alt:25315919...25323515
NR annotation: XP_029197894.2, methanethiol oxidase isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q569D5	Methanethiol oxidase OS=Xenopus tropicalis OX=8364 GN=selenbp1 PE=2 SV=1
Q13228	Methanethiol oxidase OS=Homo sapiens OX=9606 GN=SELENBP1 PE=1 SV=2
Q8VIF7	Methanethiol oxidase OS=Rattus norvegicus OX=10116 GN=Selenbp1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05694 all species →	SBP56	56kDa selenium binding protein (SBP56)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008826 all species →	Family	Selenium-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23300 all species →	METHANETHIOL OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008430 all species →	Molecular Function	selenium binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17285	SELENBP1; methanethiol oxidase	EC:1.8.3.4	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6972.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

198.8Max TPM

70.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	70.83	198.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	198.77
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	181.72
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	125.65
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	121.97
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	110.54
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	108.76
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	98.54
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	92.67
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	91.88
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	87.60
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	85.66
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	71.55
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	68.88
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	65.88
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	65.32
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	65.27
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	63.91
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	63.04
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	59.39
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	58.74
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	56.68
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	53.13
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	50.96
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	50.00
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	49.77
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	49.45
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	49.43
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	49.39
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	48.32
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	46.17
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	46.05
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	44.19
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	42.77
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	41.65
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	40.93
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	40.84
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	39.59
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	39.44
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	38.00

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.