Gene detail

Detailed information of g699.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047126490.1, carboxypeptidase B-like [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VL86	Zinc carboxypeptidase A 1 OS=Drosophila melanogaster OX=7227 GN=CG17633 PE=2 SV=1
Q29NC4	Zinc carboxypeptidase A 1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA14587 PE=3 SV=1
Q0II73	Carboxypeptidase O OS=Bos taurus OX=9913 GN=CPO PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000452 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000883 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001699 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001842 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001867 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003377 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006765 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007485 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0023480 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00852 all species →	Glyco_transf_10	Glycosyltransferase family 10 (fucosyltransferase) C-term	Family	Interproscan
PF17039 all species →	Glyco_tran_10_N	Fucosyltransferase, N-terminal	Domain	Interproscan
PF00246 all species →	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan
PF12161 all species →	HsdM_N	HsdM N-terminal domain	Domain	Interproscan
PF12728 all species →	HTH_17	Helix-turn-helix domain	Domain	Interproscan
PF02384 all species →	N6_Mtase	N-6 DNA Methylase	Family	Interproscan
PF00999 all species →	Na_H_Exchanger	Sodium/hydrogen exchanger family	Family	Interproscan
PF15255 all species →	CAP-ZIP_m	WASH complex subunit CAP-Z interacting, central region	Family	Interproscan
PF00481 all species →	PP2C	Protein phosphatase 2C	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01849 all species →	NAC	NAC domain	Family	Interproscan
PF19026 all species →	HYPK_UBA	HYPK UBA domain	Domain	Interproscan
PF13472 all species →	Lipase_GDSL_2	GDSL-like Lipase/Acylhydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001503 all species →	Family	Glycosyl transferase family 10	Interproscan
IPR031481 all species →	Domain	Fucosyltransferase, N-terminal	Interproscan
IPR038577 all species →	Homologous_superfamily	GT10-like, C-terminal domain superfamily	Interproscan
IPR000834 all species →	Domain	Peptidase M14, carboxypeptidase A	Interproscan
IPR051537 all species →	Family	DNA Adenine N(4)/N(6)-Methyltransferase	Interproscan
IPR002052 all species →	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan
IPR022749 all species →	Domain	N6 adenine-specific DNA methyltransferase, N-terminal domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR010093 all species →	Domain	SinI-like, DNA-binding domain	Interproscan
IPR041657 all species →	Domain	Helix-turn-helix domain, group 17	Interproscan
IPR003356 all species →	Domain	DNA methylase, adenine-specific	Interproscan
IPR009061 all species →	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR006153 all species →	Domain	Cation/H+ exchanger	Interproscan
IPR004709 all species →	Family	Na+/H+ exchanger	Interproscan
IPR018422 all species →	Family	Cation/H+ exchanger, CPA1 family	Interproscan
IPR002090 all species →	Family	Sodium/hydrogen exchanger 6/7/9	Interproscan
IPR029341 all species →	Domain	FAM21/CAPZIP domain	Interproscan
IPR036457 all species →	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR001932 all species →	Domain	PPM-type phosphatase-like domain	Interproscan
IPR000222 all species →	Binding_site	PPM-type phosphatase, divalent cation binding	Interproscan
IPR015655 all species →	Family	Protein phosphatase 2C	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR002715 all species →	Domain	Nascent polypeptide-associated complex NAC domain	Interproscan
IPR038187 all species →	Homologous_superfamily	NAC A/B domain superfamily	Interproscan
IPR044034 all species →	Domain	Nascent polypeptide-associated complex subunit alpha-like, UBA domain	Interproscan
IPR016641 all species →	Family	Nascent polypeptide-associated complex subunit alpha-like	Interproscan
IPR013830 all species →	Domain	SGNH hydrolase-type esterase domain	Interproscan
IPR051532 all species →	Family	Diverse Ester Hydrolysis Enzymes	Interproscan
IPR036514 all species →	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11929 all species →	ALPHA- 1,3 -FUCOSYLTRANSFERASE	Interproscan
PTHR11705 all species →	PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B	Interproscan
PTHR42933 all species →	SLR6095 PROTEIN	Interproscan
PTHR10110 all species →	SODIUM/HYDROGEN EXCHANGER	Interproscan
PTHR35711 all species →	EXPRESSED PROTEIN	Interproscan
PTHR13832 all species →	PROTEIN PHOSPHATASE 2C	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21713 all species →	NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED	Interproscan
PTHR30383 all species →	THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008417 all species →	Molecular Function	fucosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0036065 all species →	Biological Process	fucosylation	Interproscan
GO:0046920 all species →	Molecular Function	alpha-(1->3)-fucosyltransferase activity	Interproscan
GO:0004181 all species →	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008170 all species →	Molecular Function	N-methyltransferase activity	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0006885 all species →	Biological Process	regulation of pH	Interproscan
GO:0015385 all species →	Molecular Function	sodium:proton antiporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015386 all species →	Molecular Function	potassium:proton antiporter activity	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098719 all species →	Biological Process	sodium ion import across plasma membrane	Interproscan
GO:0043169 all species →	Molecular Function	cation binding	Interproscan
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0006469 all species →	Biological Process	negative regulation of protein kinase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005854 all species →	Cellular Component	nascent polypeptide-associated complex	Interproscan
GO:0006612 all species →	Biological Process	protein targeting to membrane	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0004622 all species →	Molecular Function	lysophospholipase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03427	hsdM; type I restriction enzyme M protein	EC:2.1.1.72	Prokaryotic defense system	ko02048	deepkoala
K03626	EGD2, NACA; nascent polypeptide-associated complex subunit alpha	-	Parathyroid hormone synthesis, secretion and action	ko04928	deepkoala
K09669	FUT10; alpha-1,3-fucosyltransferase 10	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala
K12041	SLC9A6_7, NHE6_7; solute carrier family 9 (sodium/hydrogen exchanger), member 6/7	-	Transporters	ko02000	deepkoala
K18462	FAM21; WASH complex subunit FAM21	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →